CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.521e-38
Identity = 72/110 (65.45%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM+ R+ L  + IK+ VLDE+DEMLSRGFKDQIYD+++ L  + QVVL+SAT+P ++LE+T KFM DP++ILVK++ELTLEGI+QF++ VEREEWK DTLCDLY+TL
Sbjct:  161 RVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.521e-38
Identity = 72/110 (65.45%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM+ R+ L  + IK+ VLDE+DEMLSRGFKDQIYD+++ L  + QVVL+SAT+P ++LE+T KFM DP++ILVK++ELTLEGI+QF++ VEREEWK DTLCDLY+TL
Sbjct:  161 RVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.521e-38
Identity = 72/110 (65.45%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM+ R+ L  + IK+ VLDE+DEMLSRGFKDQIYD+++ L  + QVVL+SAT+P ++LE+T KFM DP++ILVK++ELTLEGI+QF++ VEREEWK DTLCDLY+TL
Sbjct:  161 RVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 5.521e-38
Identity = 70/110 (63.64%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMIKR+ +  R +K+LVLDE+DE+L++GFK+QIY++Y+ LP   QVV++SATL  E+LEMT KF +DPVKILVKRD++TL+GIKQ+++  E+E+WKFDTLCDLYD L
Sbjct:  152 RVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGAQVVVVSATLTPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLYDNL 261
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_MAIZE (Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.210e-38
Identity = 73/110 (66.36%), Postives = 93/110 (84.55%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++ LP  +QV + SAT+P E LE+T KFM  PV+ILVKRDELTLEGIKQF+V +++E+WK DTLCDLY+TL
Sbjct:  165 RVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETL 274
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A2_RAT (Eukaryotic initiation factor 4A-II OS=Rattus norvegicus GN=Eif4a2 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.210e-38
Identity = 72/110 (65.45%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM+ R+ L  + IK+ VLDE+DEMLSRGFKDQIY++++ L   +QVVL+SAT+P ++LE+T KFM DP++ILVK++ELTLEGIKQF++ VEREEWK DTLCDLY+TL
Sbjct:  162 RVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A2_PONAB (Eukaryotic initiation factor 4A-II OS=Pongo abelii GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.210e-38
Identity = 72/110 (65.45%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM+ R+ L  + IK+ VLDE+DEMLSRGFKDQIY++++ L   +QVVL+SAT+P ++LE+T KFM DP++ILVK++ELTLEGIKQF++ VEREEWK DTLCDLY+TL
Sbjct:  162 RVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A2_MOUSE (Eukaryotic initiation factor 4A-II OS=Mus musculus GN=Eif4a2 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.210e-38
Identity = 72/110 (65.45%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM+ R+ L  + IK+ VLDE+DEMLSRGFKDQIY++++ L   +QVVL+SAT+P ++LE+T KFM DP++ILVK++ELTLEGIKQF++ VEREEWK DTLCDLY+TL
Sbjct:  162 RVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A2_HUMAN (Eukaryotic initiation factor 4A-II OS=Homo sapiens GN=EIF4A2 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.210e-38
Identity = 72/110 (65.45%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM+ R+ L  + IK+ VLDE+DEMLSRGFKDQIY++++ L   +QVVL+SAT+P ++LE+T KFM DP++ILVK++ELTLEGIKQF++ VEREEWK DTLCDLY+TL
Sbjct:  162 RVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A2_BOVIN (Eukaryotic initiation factor 4A-II OS=Bos taurus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.210e-38
Identity = 72/110 (65.45%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM+ R+ L  + IK+ VLDE+DEMLSRGFKDQIY++++ L   +QVVL+SAT+P ++LE+T KFM DP++ILVK++ELTLEGIKQF++ VEREEWK DTLCDLY+TL
Sbjct:  162 RVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
IF4A1_MACFA5.521e-3865.45Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN5.521e-3865.45Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN5.521e-3865.45Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
FAL1_PICGU5.521e-3863.64ATP-dependent RNA helicase FAL1 OS=Pichia guillier... [more]
IF4A_MAIZE7.210e-3866.36Eukaryotic initiation factor 4A OS=Zea mays PE=2 S... [more]
IF4A2_RAT7.210e-3865.45Eukaryotic initiation factor 4A-II OS=Rattus norve... [more]
IF4A2_PONAB7.210e-3865.45Eukaryotic initiation factor 4A-II OS=Pongo abelii... [more]
IF4A2_MOUSE7.210e-3865.45Eukaryotic initiation factor 4A-II OS=Mus musculus... [more]
IF4A2_HUMAN7.210e-3865.45Eukaryotic initiation factor 4A-II OS=Homo sapiens... [more]
IF4A2_BOVIN7.210e-3865.45Eukaryotic initiation factor 4A-II OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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