CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.417e-38
Identity = 70/110 (63.64%), Postives = 94/110 (85.45%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI R  L T  IK+ VLDE+DEMLSRGFKDQIY+V+R +P D+QVVL+SAT+P E+L++T +FM +P++ILVK+DELTLEGI+QF++ V+++EWKFD LCDLY+ +
Sbjct:  157 RVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVV 266          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A2_CHICK (Eukaryotic initiation factor 4A-II OS=Gallus gallus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.230e-37
Identity = 71/110 (64.55%), Postives = 95/110 (86.36%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM+ R+ L  + IK+ VLDE+DEMLSRGFKDQIY++++ L  ++QVVL+SAT+P ++LE+T KFM +P++ILVK++ELTLEGIKQF++ VEREEWK DTLCDLY+TL
Sbjct:  162 RVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVLLSATMPMDVLEVTKKFMREPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.740e-37
Identity = 75/112 (66.96%), Postives = 94/112 (83.93%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMIKR+ + TR +++LVLDE+DE+LS   GFK QIYD++  LP   QVV++SAT+  EILE+T KFM DPVKILVKRDE+TLEGIKQ++V VE+EEWKFDTLCD+YD+L
Sbjct:  152 RVLDMIKRRLIETRHVQILVLDEADELLSDTLGFKHQIYDIFTKLPRTSQVVVVSATMSPEILEITKKFMNDPVKILVKRDEITLEGIKQYYVNVEKEEWKFDTLCDIYDSL 263          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.578e-37
Identity = 69/110 (62.73%), Postives = 95/110 (86.36%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+  RT  +K+ ++DE+DEMLS GFK+QIY+++R LP   QVVL+SAT+P ++LE+TTKFM +PV+ILVK+DELTLEGIKQF++ VE+E++KFD LCDLYD++
Sbjct:  150 RVFDMIERRFFRTDKVKMFIMDEADEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVEQEDFKFDCLCDLYDSI 259          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.578e-37
Identity = 69/110 (62.73%), Postives = 95/110 (86.36%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+  +T  +K+ +LDE+DEMLS GFK+QIY+++R LP   QVVL+SAT+P ++LE+TTKFM +PV+ILVK+DELTLEGIKQF++ VE+E++KFD LCDLYD++
Sbjct:  151 RVFDMIERRFFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVEQEDYKFDCLCDLYDSI 260          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.673e-37
Identity = 74/110 (67.27%), Postives = 94/110 (85.45%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+IKR  LRT ++++LVLDE+DEMLS+GF DQIY+++R+LP D+QV L SAT+P E+LE+T KFM DPV+ILVKR+ LTLEGIKQFF+AVE EE K DTL DLY+T+
Sbjct:  157 RVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLPKDIQVALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVE-EEHKLDTLMDLYETV 265          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.673e-37
Identity = 74/110 (67.27%), Postives = 94/110 (85.45%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+IKR  LRT ++++LVLDE+DEMLS+GF DQIY+++R+LP D+QV L SAT+P E+LE+T KFM DPV+ILVKR+ LTLEGIKQFF+AVE EE K DTL DLY+T+
Sbjct:  157 RVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLPKDIQVALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVE-EEHKLDTLMDLYETV 265          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_LEIBR (Probable eukaryotic initiation factor 4A OS=Leishmania braziliensis GN=LbrM01_V2.0740 PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 4.673e-37
Identity = 74/110 (67.27%), Postives = 94/110 (85.45%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+IKR  LRT ++++LVLDE+DEMLS+GF DQIY+++R+LP D+QV L SAT+P E+LE+T KFM DPV+ILVKR+ LTLEGIKQFF+AVE EE K DTL DLY+T+
Sbjct:  157 RVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLPKDIQVALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVE-EEHKLDTLMDLYETV 265          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A2_MACFA (Eukaryotic initiation factor 4A-II OS=Macaca fascicularis GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.673e-37
Identity = 71/110 (64.55%), Postives = 93/110 (84.55%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM+ R+ L  + IK+ VLDE+D MLSRGFKDQIY++++ L   +QVVL+SAT+P ++LE+T KFM DP++ILVK++ELTLEGIKQF++ VEREEWK DTLCDLY+TL
Sbjct:  163 RVFDMLNRRYLSPKWIKMFVLDEADGMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 272          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.972e-37
Identity = 68/110 (61.82%), Postives = 94/110 (85.45%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+  +T  +K+ ++DE+DEMLS GFK+QIY+++R LP   QVVL+SAT+P ++LE+TTKFM +PV+ILVK+DELTLEGIKQF++ VE E++KFD LCDLYD++
Sbjct:  151 RVFDMIERRYFKTEKVKMFIMDEADEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDCLCDLYDSI 260          
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
IF4A_CAEEL9.417e-3863.64Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]
IF4A2_CHICK1.230e-3764.55Eukaryotic initiation factor 4A-II OS=Gallus gallu... [more]
FAL1_CANGA2.740e-3766.96ATP-dependent RNA helicase FAL1 OS=Candida glabrat... [more]
IF4A_PICGU3.578e-3762.73ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
IF4A_DEBHA3.578e-3762.73ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
IF4A_LEIMA4.673e-3767.27Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIIN4.673e-3767.27Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIBR4.673e-3767.27Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A2_MACFA4.673e-3764.55Eukaryotic initiation factor 4A-II OS=Macaca fasci... [more]
IF4A_PICST7.972e-3761.82ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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