CF503877

Overview
NameCF503877
Unique NameCF503877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length303
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9428 contig Csv1_Contig9428:70..370. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503877 vs. ExPASy Swiss-Prot
Match: RAD24_SCHPO (DNA damage checkpoint protein rad24 OS=Schizosaccharomyces pombe GN=rad24 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.011e-23
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 2
Query:   89 TKIRENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEE 301
            T  RE+ VY+AKLAEQAERY+ MV+ MK VA+ D ELTVEERNLLSV YKNVIGARRASWRI+SSIEQKEE
Sbjct:    3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEE 73          
BLAST of CF503877 vs. ExPASy Swiss-Prot
Match: 14331_SOLTU (14-3-3-like protein OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.321e-23
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 2
Query:   98 RENFVYIAKLAEQAERYDEMVDAMKKVANLDVE-LTVEERNLLSVGYKNVIGARRASWRILSSIEQKEE 301
            RE  VY+AKLAEQAERY+EMV+ M+KVA +DVE LTVEERNLLSV YKNVIGARRASWRI+SSIEQKEE
Sbjct:    5 REENVYMAKLAEQAERYEEMVEFMEKVAKVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE 73          
BLAST of CF503877 vs. ExPASy Swiss-Prot
Match: RAD25_SCHPO (DNA damage checkpoint protein rad25 OS=Schizosaccharomyces pombe GN=rad25 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.943e-23
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 2
Query:   98 RENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEE 301
            REN VY+AKLAEQAERY+EMV+ MKKVA  + +L+VEERNLLSV YKN+IGARRASWRI+SSIEQKEE
Sbjct:    5 RENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRASWRIISSIEQKEE 72          
BLAST of CF503877 vs. ExPASy Swiss-Prot
Match: BMH2_YEAST (Protein BMH2 OS=Saccharomyces cerevisiae GN=BMH2 PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 6.555e-23
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 2
Query:   89 TKIRENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEE 301
            ++ RE+ VY+AKLAEQAERY+EMV+ MK VA+   EL+VEERNLLSV YKNVIGARRASWRI+SSIEQKEE
Sbjct:    2 SQTREDSVYLAKLAEQAERYEEMVENMKAVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEE 72          
BLAST of CF503877 vs. ExPASy Swiss-Prot
Match: BMH1_YEAST (Protein BMH1 OS=Saccharomyces cerevisiae GN=BMH1 PE=1 SV=4)

HSP 1 Score: 105.531 bits (262), Expect = 8.562e-23
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 2
Query:   98 RENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEE 301
            RE+ VY+AKLAEQAERY+EMV+ MK VA+   EL+VEERNLLSV YKNVIGARRASWRI+SSIEQKEE
Sbjct:    5 REDSVYLAKLAEQAERYEEMVENMKTVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEE 72          
BLAST of CF503877 vs. ExPASy Swiss-Prot
Match: 1433_CANAL (14-3-3 protein homolog OS=Candida albicans GN=BMH1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.562e-23
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 2
Query:   98 RENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEE 301
            RE+ VY+AKLAEQAERY+EMV+ MK VA+   EL+VEERNLLSV YKNVIGARRASWRI+SSIEQKEE
Sbjct:    5 REDSVYLAKLAEQAERYEEMVENMKAVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEE 72          
BLAST of CF503877 vs. ExPASy Swiss-Prot
Match: 14334_ARATH (14-3-3-like protein GF14 phi OS=Arabidopsis thaliana GN=GRF4 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.562e-23
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 2
Query:   98 RENFVYIAKLAEQAERYDEMVDAMKKVANL--DVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEE 301
            RE FVY+AKLAEQAERY+EMV+ M+KVA      ELTVEERNLLSV YKNVIGARRASWRI+SSIEQKEE
Sbjct:   11 REEFVYLAKLAEQAERYEEMVEFMEKVAEAVDKDELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE 80          
BLAST of CF503877 vs. ExPASy Swiss-Prot
Match: 14331_ENTHI (14-3-3 protein 1 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.562e-23
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 2
Query:   98 RENFVYIAKLAEQAERYDEMVDAMKKVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEE 301
            RE+ VY AKLAEQ+ERYDEMV  MK+VA ++ EL++EERNLLSV YKNVIGA+RASWRI+SS+EQKE+
Sbjct:    4 REDCVYTAKLAEQSERYDEMVQCMKQVAEMEAELSIEERNLLSVAYKNVIGAKRASWRIISSLEQKEQ 71          
BLAST of CF503877 vs. ExPASy Swiss-Prot
Match: 1433F_TOBAC (14-3-3-like protein F OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.907e-22
Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = 2
Query:   98 RENFVYIAKLAEQAERYDEMVDAMKKV---ANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEE 301
            R+ FVY+AKLAEQAERY+EMVD M+KV   A+   ELT+EERNLLSV YKNVIGARRASWRI+SSIEQKEE
Sbjct:    5 RDEFVYMAKLAEQAERYEEMVDFMEKVVTAADGGEELTIEERNLLSVAYKNVIGARRASWRIISSIEQKEE 75          
BLAST of CF503877 vs. ExPASy Swiss-Prot
Match: 14336_ORYSJ (14-3-3-like protein GF14-F OS=Oryza sativa subsp. japonica GN=GF14F PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.907e-22
Identity = 59/76 (77.63%), Postives = 64/76 (84.21%), Query Frame = 2
Query:   80 SPWTKIRENFVYIAKLAEQAERYDEMVDAMKKVANL-DV-ELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEE 301
            SP    RE  VY+AKLAEQAERY+EMV+ M+KVA   DV ELTVEERNLLSV YKNVIGARRASWRI+SSIEQKEE
Sbjct:    2 SPAEASREENVYMAKLAEQAERYEEMVEFMEKVAKTTDVGELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE 77          
The following BLAST results are available for this feature:
BLAST of CF503877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
RAD24_SCHPO1.011e-2378.87DNA damage checkpoint protein rad24 OS=Schizosacch... [more]
14331_SOLTU1.321e-2382.6114-3-3-like protein OS=Solanum tuberosum PE=2 SV=1[more]
RAD25_SCHPO2.943e-2379.41DNA damage checkpoint protein rad25 OS=Schizosacch... [more]
BMH2_YEAST6.555e-2376.06Protein BMH2 OS=Saccharomyces cerevisiae GN=BMH2 P... [more]
BMH1_YEAST8.562e-2379.41Protein BMH1 OS=Saccharomyces cerevisiae GN=BMH1 P... [more]
1433_CANAL8.562e-2379.4114-3-3 protein homolog OS=Candida albicans GN=BMH1... [more]
14334_ARATH8.562e-2380.0014-3-3-like protein GF14 phi OS=Arabidopsis thalia... [more]
14331_ENTHI8.562e-2373.5314-3-3 protein 1 OS=Entamoeba histolytica PE=3 SV=... [more]
1433F_TOBAC1.907e-2277.4614-3-3-like protein F OS=Nicotiana tabacum PE=2 SV... [more]
14336_ORYSJ1.907e-2277.6314-3-3-like protein GF14-F OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-364 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503877 ID=CF503877; Name=CF503877; organism=Citrus sinensis; type=EST; length=303bp
ATCTTCTCCTCTCCTTCTGAGTTCTCAGTTCTCAGTTCTCAGTTCTCACA
TTACAGTACTGCTTGTAAAAGCAAAAGATTCGCCATGGACAAAGATCCGT
GAAAACTTCGTTTACATCGCCAAGCTTGCTGAACAAGCTGAACGATACGA
CGAAATGGTTGATGCAATGAAAAAGGTAGCGAATCTTGACGTGGAACTGA
CTGTGGAGGAGAGAAACTTACTCTCGGTTGGGTATAAGAATGTGATTGGT
GCACGTAGAGCATCATGGAGGATTCTTTCGTCGATAGAGCAGAAAGAAGA
GGC
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