CF503878

Overview
NameCF503878
Unique NameCF503878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length370
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:625..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.935e-51
Identity = 99/123 (80.49%), Postives = 107/123 (86.99%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+DTHLDSLVGQALF            PDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  197 EITAVTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQV 319
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSY_ARAAL (Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.935e-51
Identity = 99/123 (80.49%), Postives = 107/123 (86.99%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+DTHLDSLVGQALF            PDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  193 EITAVTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQV 315
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSY_PERFR (Chalcone synthase OS=Perilla frutescens GN=CHS PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.300e-51
Identity = 98/122 (80.33%), Postives = 104/122 (85.25%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+++HLDSLVGQALF            P   VERPL+QLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPSESHLDSLVGQALFGDGAAAVIVGSDPVVGVERPLFQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPLGISDWNSVFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS1_CAMSI (Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.300e-51
Identity = 98/122 (80.33%), Postives = 105/122 (86.07%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+DTHLDSLVGQALF            P   VE+PL++LVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL+EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPSDTHLDSLVGQALFGDGAAAIIVGSDPIPEVEKPLFELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLAEAFQPLGISDWNSLFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS3_SINAL (Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 7.351e-51
Identity = 98/123 (79.67%), Postives = 106/123 (86.18%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+DTHLDSLVGQALF            PDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILD V
Sbjct:  197 EITAVTFRGPSDTHLDSLVGQALFSDGAAAIIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDDV 319
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.254e-50
Identity = 94/122 (77.05%), Postives = 106/122 (86.89%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+++HLDS+VGQALF            PD +VERPL+Q+VS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +AF PLGISDWNSIFW+AHPGGPAILDQV
Sbjct:  195 EITAVTFRGPSESHLDSMVGQALFGDGAAAVIVGSDPDEAVERPLFQMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQV 316
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.254e-50
Identity = 94/122 (77.05%), Postives = 106/122 (86.89%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+++HLDS+VGQALF            PD +VERPL+Q+VS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +AF PLGISDWNSIFW+AHPGGPAILDQV
Sbjct:  195 EITAVTFRGPSESHLDSMVGQALFGDGAAAVIVGSDPDEAVERPLFQMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQV 316
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSY_ARATH (Chalcone synthase OS=Arabidopsis thaliana GN=CHS PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.254e-50
Identity = 98/123 (79.67%), Postives = 106/123 (86.18%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+DTHLDSLVGQALF            PDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNI KSL EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  197 EITAVTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIVKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQV 319
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSY_ANTMA (Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.254e-50
Identity = 97/122 (79.51%), Postives = 103/122 (84.43%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGPADTHLDSLVGQALF            P   VERPL+Q+V+ +QT+LPDS GAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPADTHLDSLVGQALFGDGAAAVIVGSDPVVGVERPLFQIVTAAQTLLPDSHGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFDPLGISDWNSVFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS1_CASGL (Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.254e-50
Identity = 97/122 (79.51%), Postives = 105/122 (86.07%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+DTHLDSLVGQALF            P   VE+PL+++VST+QTILPDSDGAIDGHLREVG+TFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPSDTHLDSLVGQALFGDGAAAIIVGADPLPEVEKPLFEVVSTAQTILPDSDGAIDGHLREVGVTFHLLKDVPGLISKNIEKSLVEAFQPLGISDWNSLFWIAHPGGPAILDQV 313
The following BLAST results are available for this feature:
BLAST of CF503878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHSY_CARAN1.935e-5180.49Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHSY_ARAAL1.935e-5180.49Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=... [more]
CHSY_PERFR3.300e-5180.33Chalcone synthase OS=Perilla frutescens GN=CHS PE=... [more]
CHS1_CAMSI3.300e-5180.33Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 P... [more]
CHS3_SINAL7.351e-5179.67Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 S... [more]
CHSY_ORYSJ1.254e-5077.05Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI1.254e-5077.05Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHSY_ARATH1.254e-5079.67Chalcone synthase OS=Arabidopsis thaliana GN=CHS P... [more]
CHSY_ANTMA1.254e-5079.51Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3... [more]
CHS1_CASGL1.254e-5079.51Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-365 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503878 ID=CF503878; Name=CF503878; organism=Citrus sinensis; type=EST; length=370bp
CGGAGATCACGGCAGTCACTTTCCGCGGCCCTGCCGATACTCATCTTGAT
TCTCTTGTGGGCCAGGCTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGT
GGGTGCCGATCCTGACACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGT
CGACTTCGCAGACGATCCTCCCTGACTCTGACGGTGCAATTGACGGACAC
TTGCGCGAAGTCGGTCTCACTTTCCATTTGCTTAAAGACGTCCCCGGCTT
GATCTCAAAGAATATAGAGAAAAGCCTGTCTGAAGCGTTCGCCCCGCTTG
GCATCAGCGACTGGAACTCGATATTCTGGATCGCTCACCCCGGTGGGCCC
GCAATTCTGGACCAAGTGGA
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