CF503878

Overview
NameCF503878
Unique NameCF503878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length370
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS8_IPOBA (Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DIV PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44
Identity = 88/122 (72.13%), Postives = 98/122 (80.33%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EIT VTFRGP++THLDSLVGQALF            P T  E+PL+QLVS +QT+ P+S GAIDGHLREVGLTFHLLKDVP ++S NIEK L EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITVVTFRGPSETHLDSLVGQALFGDGAAAVIVGADP-TPAEKPLFQLVSAAQTLAPNSCGAIDGHLREVGLTFHLLKDVPSVVSNNIEKCLFEAFNPLGISDWNSVFWIAHPGGPAILDQV 312          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS6_IPOBA (Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DII PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44
Identity = 88/122 (72.13%), Postives = 98/122 (80.33%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EIT VTFRGP++THLDSLVGQALF            P T  E+PL+QLVS +QT+ P+S GAIDGHLREVGLTFHLLKDVP ++S NIEK L EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITVVTFRGPSETHLDSLVGQALFGDGAAAVIVGADP-TPAEKPLFQLVSAAQTLAPNSCGAIDGHLREVGLTFHLLKDVPSVVSNNIEKCLFEAFNPLGISDWNSVFWIAHPGGPAILDQV 312          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS4_IPOBA (Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF4 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44
Identity = 88/122 (72.13%), Postives = 97/122 (79.51%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EIT VTFRGP++THLDSLVGQALF            P T  E+PL+QLVS +Q + PDS GAIDGHLREVGLTFHLLKDVP ++S NIEK L EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITVVTFRGPSETHLDSLVGQALFGDGAAAVIVGADP-TPAEKPLFQLVSAAQNLAPDSCGAIDGHLREVGLTFHLLKDVPSVVSNNIEKCLFEAFNPLGISDWNSVFWIAHPGGPAILDQV 312          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS3_IPOBA (Chalcone synthase LF3 OS=Ipomoea batatas GN=CHS-LF3 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44
Identity = 88/122 (72.13%), Postives = 97/122 (79.51%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EIT VTFRGP++ HLDSLVGQALF            P T  E+PL+QLVS +QT+ PDS GAIDGHLREVGLTFHLLKDVP ++S NIEK L EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITVVTFRGPSEAHLDSLVGQALFGDGAAAVIVGADP-TPAEKPLFQLVSAAQTLAPDSCGAIDGHLREVGLTFHLLKDVPSVVSNNIEKCLFEAFNPLGISDWNSVFWIAHPGGPAILDQV 312          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS1_MEDSA (Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.103e-44
Identity = 84/122 (68.85%), Postives = 98/122 (80.33%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E T VTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+ TI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI+K+L EAF PL ISD+NSIFWIAHPGGPAILDQV
Sbjct:  192 EETPVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPIPEIEKPIFEMVWTAHTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALIEAFQPLNISDYNSIFWIAHPGGPAILDQV 313          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS1_IPOBA (Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.664e-44
Identity = 87/122 (71.31%), Postives = 97/122 (79.51%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EIT VTFRGP++THLDSLVGQALF            P T  E+PL+QLVS +QT+ P+S GAIDGHLREVGLTFHLLKDVP ++S  IEK L EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITVVTFRGPSETHLDSLVGQALFGDGAAAVIVGADP-TPAEKPLFQLVSAAQTLAPNSCGAIDGHLREVGLTFHLLKDVPSVVSNKIEKCLFEAFNPLGISDWNSVFWIAHPGGPAILDQV 312          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: VPS_HUMLU (Phloroisovalerophenone synthase OS=Humulus lupulus GN=VPS PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.642e-43
Identity = 83/123 (67.48%), Postives = 99/123 (80.49%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITA  FRGP++ HLD LVGQ+LF            PD SV ERP+++LVS +QTILP+SDGAI GH+ E GLTFHLL+DVPGLIS+NIEKSL EAF P+GI+DWN+IFWIAHPGGPAILD++
Sbjct:  194 EITACIFRGPSEKHLDCLVGQSLFGDGASSVIVGADPDASVGERPIFELVSAAQTILPNSDGAIAGHVTEAGLTFHLLRDVPGLISQNIEKSLIEAFTPIGINDWNNIFWIAHPGGPAILDEI 316          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS2_HORVU (Chalcone synthase 2 OS=Hordeum vulgare GN=CHS2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.257e-42
Identity = 83/122 (68.03%), Postives = 96/122 (78.69%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITA+ FRGP  +HLDSLVG ALF            PD   E+P++QLVS SQTILP+S+GAIDGHL E GLT HLLKDVPGLIS+NIE++L +AF PLGI +WNSIFWIAHPGGPAILD+V
Sbjct:  194 EITAMAFRGPCKSHLDSLVGHALFGDGAAAAIIGADPDQLDEQPVFQLVSASQTILPESEGAIDGHLTEAGLTIHLLKDVPGLISENIEQALEDAFEPLGIHNWNSIFWIAHPGGPAILDRV 315          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: THS7_VITVI (Stilbene synthase 6 OS=Vitis vinifera GN=STS PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.390e-41
Identity = 83/122 (68.03%), Postives = 96/122 (78.69%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EIT VTFRGP++  LDSLVGQALF            PD S+ERPL+QLVS +QT +P+S GAI G+LREVGLTFHL  +VP LIS+NIEK L++AF PLGISDWNS+FWIAHPGGPAILD V
Sbjct:  192 EITVVTFRGPSEDALDSLVGQALFGDGSSAVIVGSDPDVSIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENIEKCLTQAFDPLGISDWNSLFWIAHPGGPAILDAV 313          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: THS1_VITVI (Stilbene synthase 1 OS=Vitis vinifera GN=VINST1 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.390e-41
Identity = 83/122 (68.03%), Postives = 96/122 (78.69%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EIT VTFRGP++  LDSLVGQALF            PD S+ERPL+QLVS +QT +P+S GAI G+LREVGLTFHL  +VP LIS+NIEK L++AF PLGISDWNS+FWIAHPGGPAILD V
Sbjct:  192 EITVVTFRGPSEDALDSLVGQALFGDGSSAVIVGSDPDVSIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENIEKCLTQAFDPLGISDWNSLFWIAHPGGPAILDAV 313          
The following BLAST results are available for this feature:
BLAST of CF503878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHS8_IPOBA1.343e-4472.13Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DI... [more]
CHS6_IPOBA1.343e-4472.13Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DI... [more]
CHS4_IPOBA1.343e-4472.13Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS3_IPOBA1.343e-4472.13Chalcone synthase LF3 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS1_MEDSA5.103e-4468.85Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=... [more]
CHS1_IPOBA6.664e-4471.31Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF... [more]
VPS_HUMLU5.642e-4367.48Phloroisovalerophenone synthase OS=Humulus lupulus... [more]
CHS2_HORVU1.257e-4268.03Chalcone synthase 2 OS=Hordeum vulgare GN=CHS2 PE=... [more]
THS7_VITVI1.390e-4168.03Stilbene synthase 6 OS=Vitis vinifera GN=STS PE=2 ... [more]
THS1_VITVI1.390e-4168.03Stilbene synthase 1 OS=Vitis vinifera GN=VINST1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-365 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503878 ID=CF503878; Name=CF503878; organism=Citrus sinensis; type=EST; length=370bp
CGGAGATCACGGCAGTCACTTTCCGCGGCCCTGCCGATACTCATCTTGAT
TCTCTTGTGGGCCAGGCTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGT
GGGTGCCGATCCTGACACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGT
CGACTTCGCAGACGATCCTCCCTGACTCTGACGGTGCAATTGACGGACAC
TTGCGCGAAGTCGGTCTCACTTTCCATTTGCTTAAAGACGTCCCCGGCTT
GATCTCAAAGAATATAGAGAAAAGCCTGTCTGAAGCGTTCGCCCCGCTTG
GCATCAGCGACTGGAACTCGATATTCTGGATCGCTCACCCCGGTGGGCCC
GCAATTCTGGACCAAGTGGA
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