CF503878

Overview
NameCF503878
Unique NameCF503878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length370
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSA_IPOPL (Chalcone synthase A (Fragment) OS=Ipomoea platensis GN=CHSA PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.343e-30
Identity = 63/122 (51.64%), Postives = 81/122 (66.39%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E+T   FRGP+    D+L+ Q LF            P   +E PL++LVS++QTI+PD+D  +  HL E+GLTFH  K VP LI++N+E  L +AF P GISDWNSIFWI HPGG AILD+V
Sbjct:  196 EVTLSVFRGPSLQQEDNLLAQCLFGDGSAAVIVGTDPRPGLETPLFELVSSAQTIIPDTDSHLKLHLLEMGLTFHCSKAVPSLITQNVEDCLVKAFEPFGISDWNSIFWILHPGGNAILDRV 317          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSA_IPONI (Chalcone synthase A (Fragment) OS=Ipomoea nil GN=CHSA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.762e-28
Identity = 62/122 (50.82%), Postives = 78/122 (63.93%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E+    FRGP+    D L+ Q LF            P   +E PL++LVS +QT +PD+D  +  HLRE+GLTFH  K VP LI++N+E  L +AF P GISDWNSIFWI HPGG AILD+V
Sbjct:  195 EVMLNVFRGPSLEQEDYLLAQCLFGDGSAAVIVGTEPRPGLETPLFELVSAAQTTIPDTDSHLKLHLREMGLTFHCSKAVPSLITQNVEDYLVKAFEPFGISDWNSIFWILHPGGIAILDRV 316          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSB_IPOPU (Chalcone synthase B OS=Ipomoea purpurea GN=CHSB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.301e-28
Identity = 60/122 (49.18%), Postives = 82/122 (67.21%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EIT   FRGP+    D+L+ Q LF            P   +E PL++LVS++QTI+P++D  +  HLRE+GLTFH  K VP ++++N+E  L +AF P GISDWNSIFW+ HPGG AI+D+V
Sbjct:  198 EITINIFRGPSLEQDDNLLAQCLFGDGAAAMIVAADPRPGLETPLFELVSSAQTIVPNTDSHLKLHLREMGLTFHCSKAVPSVLAENVEDCLVKAFEPYGISDWNSIFWVFHPGGNAIVDRV 319          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSB_IPONI (Chalcone synthase B (Fragment) OS=Ipomoea nil GN=CHSB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.301e-28
Identity = 60/122 (49.18%), Postives = 82/122 (67.21%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EIT   FRGP+    D+L+ Q LF            P   +E PL++LVS++QTI+P++D  +  HLRE+GLTFH  K VP ++++N+E  L +AF P GISDWNSIFW+ HPGG AI+D+V
Sbjct:  198 EITINIFRGPSLEQDDNLLAQCLFGDGAAAMIVAADPRPGLETPLFELVSSAQTIVPNTDSHLKLHLREMGLTFHCSKAVPSVLAENVEDCLVKAFEPYGISDWNSIFWVFHPGGNAIVDRV 319          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSC_IPOPU (Chalcone synthase C (Fragment) OS=Ipomoea purpurea GN=CHSC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.127e-28
Identity = 62/122 (50.82%), Postives = 77/122 (63.11%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E+    FRGP+    D+L+ Q LF            P   +E PL++LVS +QT +PD+D  +   LRE+GLTFH  K VP LI++NIE  L +AF P GISDWNSIFWI HPGG AILD V
Sbjct:  198 EVMLSVFRGPSLQQEDNLLAQCLFGDGSAAVIVGTEPRPGLETPLFELVSAAQTTIPDTDSYLKLQLREMGLTFHCSKAVPSLITQNIEDCLVKAFEPFGISDWNSIFWILHPGGNAILDGV 319          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSA_IPOTF (Chalcone synthase A (Fragment) OS=Ipomoea trifida GN=CHSA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.127e-28
Identity = 59/122 (48.36%), Postives = 82/122 (67.21%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EIT   FRGP+    D+L+ Q LF            P   +E PL++LVS++QTI+P++D  +  HLRE+GLTFH  + VP ++++N+E  L +AF P GISDWNSIFW+ HPGG AI+D+V
Sbjct:  196 EITINIFRGPSLEQDDNLLAQCLFGDGSAAMIVGKDPRPGLETPLFELVSSAQTIVPNTDSHLKLHLREMGLTFHCSRAVPSVLAENVEDCLVKAFEPYGISDWNSIFWVFHPGGNAIVDRV 317          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSA_IPOPU (Chalcone synthase A OS=Ipomoea purpurea GN=CHSA PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.695e-28
Identity = 61/122 (50.00%), Postives = 77/122 (63.11%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E+    FRGP+    D+L+ Q LF            P   +E PL++LVS +QT +PD+D  +   LRE+GLTFH  K VP LI++N+E  L +AF P GISDWNSIFWI HPGG AILD V
Sbjct:  198 EVMLSVFRGPSLQQEDNLLAQCLFGDGAAAVIVGTEPRPGLETPLFELVSAAQTTIPDTDSYLKLQLREMGLTFHCSKAVPSLITQNVEDCLVKAFEPFGISDWNSIFWILHPGGNAILDGV 319          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSA_IPOCO (Chalcone synthase A (Fragment) OS=Ipomoea cordatotriloba GN=CHSA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.948e-27
Identity = 58/121 (47.93%), Postives = 81/121 (66.94%), Query Frame = 3
Query:    6 ITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            IT   FRGP+    D+L+ Q LF            P   +E PL++LVS++QTI+P++D  +  HLRE+GLTFH  + VP ++++N+E  L +AF P GISDWNSIFW+ HPGG AI+D+V
Sbjct:  197 ITINIFRGPSLEQDDNLLAQCLFGDGSAAMIDGKDPRPGLETPLFELVSSAQTIVPNTDSHLKLHLREMGLTFHCSRAVPSVLAENVEDCLVKAFEPYGISDWNSIFWVFHPGGNAIVDRV 317          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSB_IPOTF (Chalcone synthase B (Fragment) OS=Ipomoea trifida GN=CHSB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E+    FRGP+    D+L+ Q LF            P   +E PL++L+S +QTI+PD+D  +  H+RE+GLTFH  K VP  I++N+E  L +AF P GISDWNSIFW+ HPGG AI++ V
Sbjct:  200 EVMLSVFRGPSLQQEDNLLAQCLFGDGSAAIIIGTDPRPGLETPLFELISAAQTIIPDTDSHLKLHVREMGLTFHCSKAVPTFITQNVEDCLVKAFEPYGISDWNSIFWVLHPGGNAIVEGV 321          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSB_IPOCO (Chalcone synthase B (Fragment) OS=Ipomoea cordatotriloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.340e-27
Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E+    FRGP+    D+L+ Q LF            P   +E PL++L+S +QTI+P++D  +  H+RE+GLTFH  K VP  I++N+E  L +AF P GISDWNSIFW+ HPGG AI+D V
Sbjct:  198 EVMLSVFRGPSLQQEDNLLAQCLFGDGSAALIVGTDPRPGLETPLFELISAAQTIIPNTDSHLKLHVREMGLTFHCSKAVPTFITQNVEDCLVKAFEPYGISDWNSIFWVLHPGGNAIVDGV 319          
The following BLAST results are available for this feature:
BLAST of CF503878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHSA_IPOPL9.343e-3051.64Chalcone synthase A (Fragment) OS=Ipomoea platensi... [more]
CHSA_IPONI1.762e-2850.82Chalcone synthase A (Fragment) OS=Ipomoea nil GN=C... [more]
CHSB_IPOPU2.301e-2849.18Chalcone synthase B OS=Ipomoea purpurea GN=CHSB PE... [more]
CHSB_IPONI2.301e-2849.18Chalcone synthase B (Fragment) OS=Ipomoea nil GN=C... [more]
CHSC_IPOPU5.127e-2850.82Chalcone synthase C (Fragment) OS=Ipomoea purpurea... [more]
CHSA_IPOTF5.127e-2848.36Chalcone synthase A (Fragment) OS=Ipomoea trifida ... [more]
CHSA_IPOPU6.695e-2850.00Chalcone synthase A OS=Ipomoea purpurea GN=CHSA PE... [more]
CHSA_IPOCO1.948e-2747.93Chalcone synthase A (Fragment) OS=Ipomoea cordatot... [more]
CHSB_IPOTF3.323e-2746.72Chalcone synthase B (Fragment) OS=Ipomoea trifida ... [more]
CHSB_IPOCO4.340e-2746.72Chalcone synthase B (Fragment) OS=Ipomoea cordatot... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-365 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503878 ID=CF503878; Name=CF503878; organism=Citrus sinensis; type=EST; length=370bp
CGGAGATCACGGCAGTCACTTTCCGCGGCCCTGCCGATACTCATCTTGAT
TCTCTTGTGGGCCAGGCTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGT
GGGTGCCGATCCTGACACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGT
CGACTTCGCAGACGATCCTCCCTGACTCTGACGGTGCAATTGACGGACAC
TTGCGCGAAGTCGGTCTCACTTTCCATTTGCTTAAAGACGTCCCCGGCTT
GATCTCAAAGAATATAGAGAAAAGCCTGTCTGAAGCGTTCGCCCCGCTTG
GCATCAGCGACTGGAACTCGATATTCTGGATCGCTCACCCCGGTGGGCCC
GCAATTCTGGACCAAGTGGA
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