CF503878

Overview
NameCF503878
Unique NameCF503878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length370
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:625..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS2_CAMSI (Chalcone synthase 2 OS=Camellia sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.386e-49
Identity = 95/122 (77.87%), Postives = 103/122 (84.43%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+D HLDSLVGQALF            P   VE+PL++LVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL+EAF PL I+DWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPSDAHLDSLVGQALFGDGAAAIIVGSDPIPEVEKPLFELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLNEAFQPLNITDWNSLFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS1_MAIZE (Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.365e-49
Identity = 93/122 (76.23%), Postives = 104/122 (85.25%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+++H+DSLVGQALF            PD  VERPL+QLVS +QTILPDS+GAIDGHLREVGL FHLLKDVPGLISKNIE++L +AF PLGISDWNSIFW+AHPGGPAILDQV
Sbjct:  195 EITAVTFRGPSESHVDSLVGQALFGDGAAAGRGGADPDGRVERPLFQLVSAAQTILPDSEGAIDGHLREVGLAFHLLKDVPGLISKNIERALEDAFEPLGISDWNSIFWVAHPGGPAILDQV 316
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSB_SOLTU (Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.089e-49
Identity = 94/122 (77.05%), Postives = 104/122 (85.25%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+++HLDSLVGQALF            P   VERPL++LVS +QT++PDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPSESHLDSLVGQALFGDGAAAIIMGSDPIIGVERPLFELVSAAQTLVPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLLEAFQPLGISDWNSLFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSA_SOLTU (Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.089e-49
Identity = 94/122 (77.05%), Postives = 104/122 (85.25%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+++HLDSLVGQALF            P   VERPL++LVS +QT++PDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPSESHLDSLVGQALFGDGAAAIIMGSDPIIGVERPLFELVSAAQTLVPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLLEAFQPLGISDWNSLFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS9_DAUCA (Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.089e-49
Identity = 94/122 (77.05%), Postives = 101/122 (82.79%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EIT +TFRGP DTHLDSLVGQALF            P   +E+PL+++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNI KSL EAF PLGISDWNSIFWIAHPGGPAILDQV
Sbjct:  192 EITVITFRGPNDTHLDSLVGQALFGDGAGAVIVGSDPVIGIEKPLFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIRKSLVEAFKPLGISDWNSIFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS1_SOLLC (Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS1 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 3.089e-49
Identity = 94/122 (77.05%), Postives = 104/122 (85.25%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+++HLDSLVGQALF            P   VERPL++LVS +QT++PDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPSESHLDSLVGQALFGDGAAAIIIGSDPIIGVERPLFELVSAAQTLVPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLLEAFQPLGISDWNSLFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS1_DAUCA (Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.089e-49
Identity = 94/122 (77.05%), Postives = 101/122 (82.79%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EIT +TFRGP DTHLDSLVGQALF            P   +E+PL+++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNI KSL EAF PLGISDWNSIFWIAHPGGPAILDQV
Sbjct:  192 EITVITFRGPNDTHLDSLVGQALFGDGAGAVIVGSDPVIGIEKPLFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIRKSLVEAFKPLGISDWNSIFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS8_BROFI (Chalcone synthase 8 OS=Bromheadia finlaysoniana GN=CHS8 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.034e-49
Identity = 92/122 (75.41%), Postives = 104/122 (85.25%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+++HLDSLVGQALF            PD++ ERPL+QLVS SQTILP+S+GAIDGHLRE+GLTFHLLKDVPGLISKNI+K L +AF PLG+ DWNSIFWIAHPGGPAILDQV
Sbjct:  193 EITAVTFRGPSESHLDSLVGQALFGDGAAAIIVGSDPDSATERPLFQLVSASQTILPESEGAIDGHLREIGLTFHLLKDVPGLISKNIQKCLLDAFKPLGVHDWNSIFWIAHPGGPAILDQV 314
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS4_BROFI (Chalcone synthase 4 OS=Bromheadia finlaysoniana GN=CHS4 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.034e-49
Identity = 92/122 (75.41%), Postives = 104/122 (85.25%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+++HLDSLVGQALF            PD++ ERPL+QLVS SQTILP+S+GAIDGHLRE+GLTFHLLKDVPGLISKNI+K L +AF PLG+ DWNSIFWIAHPGGPAILDQV
Sbjct:  193 EITAVTFRGPSESHLDSLVGQALFGDGAAAIIVGSDPDSATERPLFQLVSASQTILPESEGAIDGHLREIGLTFHLLKDVPGLISKNIQKCLLDAFKPLGVHDWNSIFWIAHPGGPAILDQV 314
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS3_BROFI (Chalcone synthase 3 OS=Bromheadia finlaysoniana GN=CHS3 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.034e-49
Identity = 92/122 (75.41%), Postives = 104/122 (85.25%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+++HLDSLVGQALF            PD++ ERPL+QLVS SQTILP+S+GAIDGHLRE+GLTFHLLKDVPGLISKNI+K L +AF PLG+ DWNSIFWIAHPGGPAILDQV
Sbjct:  193 EITAVTFRGPSESHLDSLVGQALFGDGAAAIIVGSDPDSATERPLFQLVSASQTILPESEGAIDGHLREIGLTFHLLKDVPGLISKNIQKCLLDAFKPLGVHDWNSIFWIAHPGGPAILDQV 314
The following BLAST results are available for this feature:
BLAST of CF503878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHS2_CAMSI1.386e-4977.87Chalcone synthase 2 OS=Camellia sinensis GN=CHS2 P... [more]
CHS1_MAIZE2.365e-4976.23Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV... [more]
CHSB_SOLTU3.089e-4977.05Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B... [more]
CHSA_SOLTU3.089e-4977.05Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A... [more]
CHS9_DAUCA3.089e-4977.05Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 ... [more]
CHS1_SOLLC3.089e-4977.05Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS... [more]
CHS1_DAUCA3.089e-4977.05Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 ... [more]
CHS8_BROFI4.034e-4975.41Chalcone synthase 8 OS=Bromheadia finlaysoniana GN... [more]
CHS4_BROFI4.034e-4975.41Chalcone synthase 4 OS=Bromheadia finlaysoniana GN... [more]
CHS3_BROFI4.034e-4975.41Chalcone synthase 3 OS=Bromheadia finlaysoniana GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-365 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503878 ID=CF503878; Name=CF503878; organism=Citrus sinensis; type=EST; length=370bp
CGGAGATCACGGCAGTCACTTTCCGCGGCCCTGCCGATACTCATCTTGAT
TCTCTTGTGGGCCAGGCTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGT
GGGTGCCGATCCTGACACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGT
CGACTTCGCAGACGATCCTCCCTGACTCTGACGGTGCAATTGACGGACAC
TTGCGCGAAGTCGGTCTCACTTTCCATTTGCTTAAAGACGTCCCCGGCTT
GATCTCAAAGAATATAGAGAAAAGCCTGTCTGAAGCGTTCGCCCCGCTTG
GCATCAGCGACTGGAACTCGATATTCTGGATCGCTCACCCCGGTGGGCCC
GCAATTCTGGACCAAGTGGA
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