CF503880

Overview
NameCF503880
Unique NameCF503880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11494 contig Csv1_Contig11494:61..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_RHOPB (Elongation factor Tu OS=Rhodopseudomonas palustris (strain BisB18) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.358e-20
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R K H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEEK RGITI+TAH
Sbjct:    4 AKFERNKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEEKARGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_RHOP5 (Elongation factor Tu OS=Rhodopseudomonas palustris (strain BisA53) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.358e-20
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R K H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEEK RGITI+TAH
Sbjct:    4 AKFERNKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEEKARGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_RECAM (Elongation factor Tu, mitochondrial OS=Reclinomonas americana GN=TUFA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.358e-20
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S   F RTK H N+GTIGHVDHGKTTLTAAITKVL+E G A    +D+IDKAPEEKKRGITI+T+H
Sbjct:    2 SKEKFERTKPHCNIGTIGHVDHGKTTLTAAITKVLSETGGAVFTDYDQIDKAPEEKKRGITISTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_MAGSM (Elongation factor Tu OS=Magnetococcus sp. (strain MC-1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.358e-20
Identity = 46/62 (74.19%), Postives = 55/62 (88.71%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F RTK HVN+GTIGHVDHGKTTLTAAITKV+A  G+A+  A+D+ID APEE++RGITI+TAH
Sbjct:    6 FARTKPHVNIGTIGHVDHGKTTLTAAITKVMAAAGRAEFRAYDQIDGAPEERERGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_LAWIP (Elongation factor Tu OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.358e-20
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            FTR K HVNVGTIGH+DHGKTTLTAAITKV + +   K + +DEIDKAPEEK+RGITIATAH
Sbjct:    6 FTRNKPHVNVGTIGHIDHGKTTLTAAITKVASMKMGGKFVGYDEIDKAPEEKERGITIATAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU2_RHORT (Elongation factor Tu 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.358e-20
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S   F RTK H NVGTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEE+ RGITI+TAH
Sbjct:    2 SKEKFARTKPHCNVGTIGHVDHGKTSLTAAITKVLAEAGGATFQAYDQIDKAPEERARGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU2_RHOPS (Elongation factor Tu 2 OS=Rhodopseudomonas palustris (strain BisB5) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.358e-20
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R K H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEEK RGITI+TAH
Sbjct:    4 AKFERNKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEEKARGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU1_RHORT (Elongation factor Tu 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.358e-20
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S   F RTK H NVGTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEE+ RGITI+TAH
Sbjct:    2 SKEKFARTKPHCNVGTIGHVDHGKTSLTAAITKVLAEAGGATFQAYDQIDKAPEERARGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU1_RHOPS (Elongation factor Tu 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.358e-20
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R K H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEEK RGITI+TAH
Sbjct:    4 AKFERNKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEEKARGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_MAGSA (Elongation factor Tu OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.773e-20
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R K H N+GTIGHVDHGKT+LTAAITK+LAE G A   A+D+IDKAPEEK RGITI+TAH
Sbjct:    4 AKFERNKPHCNIGTIGHVDHGKTSLTAAITKILAETGGATFTAYDQIDKAPEEKARGITISTAH 67          
The following BLAST results are available for this feature:
BLAST of CF503880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_RHOPB1.358e-2075.00Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_RHOP51.358e-2075.00Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_RECAM1.358e-2072.73Elongation factor Tu, mitochondrial OS=Reclinomona... [more]
EFTU_MAGSM1.358e-2074.19Elongation factor Tu OS=Magnetococcus sp. (strain ... [more]
EFTU_LAWIP1.358e-2075.81Elongation factor Tu OS=Lawsonia intracellularis (... [more]
EFTU2_RHORT1.358e-2074.24Elongation factor Tu 2 OS=Rhodospirillum rubrum (s... [more]
EFTU2_RHOPS1.358e-2075.00Elongation factor Tu 2 OS=Rhodopseudomonas palustr... [more]
EFTU1_RHORT1.358e-2074.24Elongation factor Tu 1 OS=Rhodospirillum rubrum (s... [more]
EFTU1_RHOPS1.358e-2075.00Elongation factor Tu 1 OS=Rhodopseudomonas palustr... [more]
EFTU_MAGSA1.773e-2073.44Elongation factor Tu OS=Magnetospirillum magneticu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-367 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503880 ID=CF503880; Name=CF503880; organism=Citrus sinensis; type=EST; length=417bp
GTTTTACATACAGCTCGTTTTGAACATACTTTCTCTCACTCGCTCACTCG
GAATCAATGGCTTCGGTGGTTCTTAGAAACCCTAACTCCAAGAGAATTGT
GCCGTTTTCATCCCAAATCTACTCTTGCTGCCGCGGCTCTCTCTCCATCT
CCGACGCTTTCTCCGCAAATGAAACTTCTGCTACTCGCTGCGGCCCCTCT
GTTAACCCCTGGTGGAGATCCATGGCCACCTTCACTCGCACAAAGCTTCA
CGTGAATGTGGGAACAATTGGACACGTTGATCATGGGAAGACTACACTTA
CTGCTGCGATTACCAAGGTGCTAGCAGAAGAAGGGAAAGCAAAAGCTATT
GCCTTTGATGAAATTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTAC
TATTGCAACGGCCCATG
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