CF503882

Overview
NameCF503882
Unique NameCF503882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length356
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2013 contig Csv1_Contig2013:196..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503882 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.065e-28
Identity = 45/54 (83.33%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:  193 DQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAL 354
            + C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL
Sbjct:   81 NMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAL 134

HSP 2 Score: 49.2914 bits (116), Expect = 2.065e-28
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 3 
Query:   18 AKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIA 116
            +KDY +PPPAP  +  EL  WSFYRA IAEFIA
Sbjct:   29 SKDYKEPPPAPFFEPGELKSWSFYRAGIAEFIA 61
[Close]
BLAST of CF503882 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.689e-28
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:  181 NLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAL 354
            N +  +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+
Sbjct:   78 NKSASKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAV 135

HSP 2 Score: 50.0618 bits (118), Expect = 2.689e-28
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 3 
Query:   21 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIA 116
            KDY +PP AP+ + EEL  WSFYRA IAEF+A
Sbjct:   31 KDYREPPAAPVFEVEELTSWSFYRAGIAEFVA 62
[Close]
BLAST of CF503882 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.689e-28
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:  193 DQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAL 354
            + C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+
Sbjct:   80 NMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAV 133

HSP 2 Score: 50.0618 bits (118), Expect = 2.689e-28
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 3 
Query:   15 SAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIA 116
            S KDY +PPPAPL +  EL  WSF+RA IAEFIA
Sbjct:   27 SDKDYKEPPPAPLFEPGELASWSFWRAGIAEFIA 60
[Close]
BLAST of CF503882 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.500e-28
Identity = 45/54 (83.33%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:  193 DQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAL 354
            + C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL
Sbjct:   80 NMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAL 133

HSP 2 Score: 48.521 bits (114), Expect = 3.500e-28
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 3 
Query:   15 SAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIA 116
            S KDY +PPPAP  +  EL  WSF+RA IAEFIA
Sbjct:   27 SDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIA 60
[Close]
BLAST of CF503882 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.500e-28
Identity = 45/54 (83.33%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:  193 DQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAL 354
            + C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL
Sbjct:   80 NMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAL 133

HSP 2 Score: 48.521 bits (114), Expect = 3.500e-28
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 3 
Query:   15 SAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIA 116
            S KDY +PPPAP  +  EL  WSF+RA IAEFIA
Sbjct:   27 SDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIA 60
[Close]
BLAST of CF503882 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.500e-28
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:  193 DQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAL 354
            + C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+
Sbjct:   80 NMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAV 133

HSP 2 Score: 49.6766 bits (117), Expect = 3.500e-28
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 3 
Query:   21 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIA 116
            KDY +PPPAP  +  EL  WSFYRA IAEFIA
Sbjct:   29 KDYKEPPPAPFFEPGELSSWSFYRAGIAEFIA 60
[Close]
BLAST of CF503882 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.556e-28
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:  187 NTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAL 354
            ++ +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+
Sbjct:   81 SSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAI 136

HSP 2 Score: 50.0618 bits (118), Expect = 4.556e-28
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 3 
Query:   21 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIA 116
            KDY +PPPAPL +  EL  WSFYRA IAEF+A
Sbjct:   32 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFVA 63
[Close]
BLAST of CF503882 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.557e-28
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:  199 CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAL 354
            C  VGI G+AWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+
Sbjct:   83 CSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAV 134

HSP 2 Score: 50.0618 bits (118), Expect = 4.557e-28
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 3 
Query:   21 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIA 116
            KDY +PPPAPL +  EL  WSFYRA IAEF+A
Sbjct:   30 KDYKEPPPAPLFEPGELSSWSFYRAGIAEFMA 61
[Close]
BLAST of CF503882 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.217e-27
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:  196 QCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAL 354
            +CG VGI GIAWAFGGMIF LVYCTAG+SGGHINPAVTFGL L RK+SL RA+
Sbjct:   89 KCGTVGIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAV 141

HSP 2 Score: 48.1358 bits (113), Expect = 2.217e-27
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 3 
Query:   21 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIA 116
            +DY +PP APL +  EL  WSFYRA IAEF+A
Sbjct:   37 RDYSEPPAAPLFEASELSSWSFYRAGIAEFVA 68
[Close]
BLAST of CF503882 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.325e-25
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:  187 NTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAL 354
            +T +C  VGI GIAW+FGGMI  LVYCTAGIS GHINPAVTFGLFL RK+SL RA+
Sbjct:   80 STSKCATVGIQGIAWSFGGMILALVYCTAGIS-GHINPAVTFGLFLARKLSLTRAV 134

HSP 2 Score: 48.1358 bits (113), Expect = 4.325e-25
Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 3 
Query:   21 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIA 116
            KDY +PPPAPL +  EL  WSFYR  IAEF+A
Sbjct:   31 KDYKEPPPAPLFEPGELKSWSFYRPGIAEFVA 62
The following BLAST results are available for this feature:
BLAST of CF503882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP15_ARATH2.065e-2883.33Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ORYSJ2.689e-2875.86Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP12_ARATH2.689e-2881.48Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_VICFA3.500e-2883.33Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH3.500e-2883.33Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP13_ARATH3.500e-2881.48Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP11_ORYSJ4.556e-2876.79Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP1_SOLLC4.557e-2882.69Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP16_MAIZE2.217e-2781.13Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP11_MAIZE4.325e-2575.00Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-369 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503882 ID=CF503882; Name=CF503882; organism=Citrus sinensis; type=EST; length=356bp
GCGGCGGCGAGTTCTCAGCCAAGGACTACCACGACCCCCCTCCGGCGCCG
CTGATCGATTTCGAGGAGCTGGGCAAGTGGTCTTTTTACAGAGCTGTAAT
TGCTGAGTTCATCGCCTACGCTTTTGTTTCTTTATGTTACCGTCTTGACT
GTGATTGGATACAAGAGCCAGACTGATCCCAACTTGAATACCGATCAGTG
TGGTGGCGTTGGCATTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATCT
TCATTCTCGTTTACTGCACAGCCGGTATTTCTGGTGGACATATCAACCCG
GCTGTGACATTCGGACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCGAGC
TCTTTT
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