CF503888

Overview
NameCF503888
Unique NameCF503888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF503888 vs. ExPASy Swiss-Prot
Match: PLCD_MOUSE (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Mus musculus GN=Agpat4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.475e-14
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:   61 LFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLP 396
            +F  SGL+VN IQ +C + I P++K  +R+IN                  +G +  ++ D +     GKE+A+VV NHK +ID+L GW LA+R G LG++  + KK   ++P
Sbjct:   20 VFIASGLIVNAIQ-LCTLVIWPINKQLFRKINARLCYCVSSQLVMLLEWWSGTECTIYTDPKACPHYGKENAIVVLNHKFEIDFLCGWSLAERLGILGNSKVLAKKELAYVP 130
[Close]
BLAST of CF503888 vs. ExPASy Swiss-Prot
Match: PLCD_PONAB (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Pongo abelii GN=AGPAT4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 38/112 (33.93%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:   61 LFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLP 396
            +F  SGL++N IQ    + + P++K  +R+IN                  +G +  +F D   Y   GKE+A+VV NHK +ID+L GW L++R G LG +  + KK   ++P
Sbjct:   20 VFIASGLIINTIQLFTLL-LWPINKQLFRKINCRLSYCISSQLVMLLEWWSGTECTIFTDPRAYLKYGKENAIVVLNHKFEIDFLCGWSLSERFGLLGGSKVLAKKELAYVP 130
[Close]
BLAST of CF503888 vs. ExPASy Swiss-Prot
Match: PLCD_HUMAN (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Homo sapiens GN=AGPAT4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 38/112 (33.93%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:   61 LFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLP 396
            +F  SGL++N IQ    + + P++K  +R+IN                  +G +  +F D   Y   GKE+A+VV NHK +ID+L GW L++R G LG +  + KK   ++P
Sbjct:   20 VFIASGLIINTIQLFTLL-LWPINKQLFRKINCRLSYCISSQLVMLLEWWSGTECTIFTDPRAYLKYGKENAIVVLNHKFEIDFLCGWSLSERFGLLGGSKVLAKKELAYVP 130
[Close]
BLAST of CF503888 vs. ExPASy Swiss-Prot
Match: PLCD_MACFA (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Macaca fascicularis GN=AGPAT4 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.054e-13
Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:   61 LFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLP 396
            +F  SGL++N +Q    + + P++K  +R+IN                  +G +  +F D   Y   GKE+A+VV NHK +ID+L GW L++R G LG +  + KK   ++P
Sbjct:   20 VFIASGLIINTVQLFTLL-LWPINKQLFRKINCRLSYCISSQLVMLLEWWSGTECTIFTDPRAYPKYGKENAIVVLNHKFEIDFLCGWSLSERFGLLGGSKVLAKKELAYVP 130
The following BLAST results are available for this feature:
BLAST of CF503888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PLCD_MOUSE5.475e-1435.711-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]
PLCD_PONAB4.635e-1333.931-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]
PLCD_HUMAN4.635e-1333.931-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]
PLCD_MACFA6.054e-1333.041-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-375 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503888 ID=CF503888; Name=CF503888; organism=Citrus sinensis; type=EST; length=396bp
AAAAGAATAGCAGAGGCCATGGCGATAGCAGCGGCAGCTGTCATCGTCCC
ATTGGGCCTTCTCTTCTTCATTTCAGGCCTCGTTGTCAATCTCATTCAGG
CAGTTTGCTTTGTGACTATTCGCCCTCTATCGAAGAACACGTACAGGAGA
ATCAATAGATGGGTAGCGGAATTGTTATGGCTGGAACTTGTATGGATAGT
TGATTGGTGGGCTGGAGTTAAGATCAAACTTTTCGTAGACCGTGAAACGT
ATCGATTAATGGGTAAAGAACATGCACTTGTTGTTTCCAATCACAAAAGT
GACATTGACTGGCTTGTTGGGTGGGTTTTGGCTCAACGGTCAGGTTGTCT
TGGTAGCACATTGGCCGTTATGAAGAAATCATCAAAATTTCTTCCG
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