CF503889

Overview
NameCF503889
Unique NameCF503889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPA_CANAL (Poly(A) polymerase PAPa OS=Candida albicans GN=PAPA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.130e-29
Identity = 58/126 (46.03%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    1 QRGYTDQMVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378
            ++  ++ M  D    IFTFGSYRLG +GPG+DID L V P +VSR  DFF + +++L    E+ E+ P+PDA VP++K +F GISIDL++A + +  VP D+ +   ++L N+DE+ +R+LNG RV
Sbjct:   68 KKNISEGMARDVGGKIFTFGSYRLGVYGPGSDIDTLVVVPKHVSRN-DFFEVFYELLKGRSELEEIAPVPDAFVPIIKIEFAGISIDLIFARLDIPRVPRDLTLDDKNLLKNIDEKDLRALNGTRV 192          
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPO3_XENLA (Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.366e-28
Identity = 60/119 (50.42%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   22 MVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378
            ++E+    IFTFGSYRLG H  GADIDALCV P +V R  D F   ++ L + EEV +L+ + +A VPV+K  F GI ID+L+A ++L  +PED+D+   S+L N+D + +RSLNGCRV
Sbjct:   86 VIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DLFSSFYEKLKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRV 203          
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPOG_MOUSE (Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.562e-24
Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 1
Query:   22 MVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378
            +V      IFTFGSYRLG H  GADIDALCV P +V R  DFF    + L   + +  L+ + DA VPV+KF+F GI IDL++A +++  + +++D+   S L ++D + +RSLNGCRV
Sbjct:   88 VVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERS-DFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSLNGCRV 205          
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPOG_HUMAN (Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.562e-24
Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 1
Query:   22 MVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378
            +V      IFTFGSYRLG H  GADIDALCV P +V R  DFF    + L   + +  L+ + DA VPV+KF+F GI IDL++A +++  + +++D+   S L ++D + +RSLNGCRV
Sbjct:   88 VVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERS-DFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSLNGCRV 205          
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAP_ENTHI (Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.764e-13
Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   40 AVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCR 375
            A I+ +GSYRL  +G  +DIDA  V  S ++R+ DF+  L+  L    +V EL+ IP    P +   +  I  DL ++  +   +P+++DI   ++L N+DE   R++NG R
Sbjct:   58 ATIYVYGSYRLNVYGNNSDIDACIVSNSTITRD-DFYDGLYAELLNNPDVKELKQIPSKRSPHLSMIYLNIEFDLNFSRTAYTSLPDNLDILNENILKNMDELDTRAINGVR 168          
The following BLAST results are available for this feature:
BLAST of CF503889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PAPA_CANAL6.130e-2946.03Poly(A) polymerase PAPa OS=Candida albicans GN=PAP... [more]
PAPO3_XENLA1.366e-2850.42Poly(A) polymerase type 3 (Fragment) OS=Xenopus la... [more]
PAPOG_MOUSE1.562e-2446.22Poly(A) polymerase gamma OS=Mus musculus GN=Papolg... [more]
PAPOG_HUMAN1.562e-2446.22Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG... [more]
PAP_ENTHI2.764e-1334.82Poly(A) polymerase OS=Entamoeba histolytica GN=16.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-376 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503889 ID=CF503889; Name=CF503889; organism=Citrus sinensis; type=EST; length=408bp
CAAAGGGGATATACAGATCAGATGGTGGAGGATGCAAATGCTGTGATTTT
TACTTTTGGGTCTTATCGCTTGGGGGCACATGGTCCAGGGGCAGATATAG
ATGCTTTATGTGTTGGGCCTTCTTATGTGAGTCGTGAGGAAGATTTCTTC
ATTATATTGCATGATATACTGGCTGAAATGGAAGAAGTTAGTGAACTTCA
ACCAATTCCAGATGCTCATGTTCCAGTTATGAAATTCAAGTTCCAGGGAA
TCTCCATTGATCTTCTTTATGCAAGTATTTCTCTTCTGGTTGTTCCAGAA
GACATAGACATTTCGCAAATGTCTGTGCTTAATAATGTTGATGAGCAAAC
TGTTCGAAGTCTTAATGGATGCAGGGTTGCCGGATCAAATTCTCAAACAC
GTTCCAAA
back to top