CF503890

Overview
NameCF503890
Unique NameCF503890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig504 contig Csv1_Contig504:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACDB_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmgC PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28
Identity = 65/180 (36.11%), Postives = 107/180 (59.44%), Query Frame = 1
Query:  154 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            Q+  ++ V  FAR+ IAP A  +++++ FP    L K MG   L GI  P++          + +A+ EISR S +VG+    H+++  N ++  G+  QK KY+P L SG+H+GA A++EP++GSD   ++  A + +G Y++NG+K++ TNG  A   + +A T    G  GI+AFI+
Sbjct:    7 QVMMRKMVRDFARKEIAPAAEIMEKTDEFP--FQLIKKMGKHGLMGIPVPEQYGGAGADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFGNEEQKMKYIPNLASGDHLGAFALTEPHSGSDAGSLRTTAIKKNGKYLLNGSKIFITNGGAADIYITFALTAPDQGRHGISAFIV 184          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACDC_BACSU (Probable acyl-CoA dehydrogenase yngJ OS=Bacillus subtilis GN=yngJ PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.080e-26
Identity = 68/180 (37.78%), Postives = 96/180 (53.33%), Query Frame = 1
Query:  154 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            Q   +E V  FA++ IAP A ++DQ+  FP     +K MG   L GI  P+E          + +A+EE+ +A GS GLSY A  +L  + L   G+  QK  +L  L SG  +G+  ++EPNAGSD  G + KA      Y+ING K W TN   A+T++V A T      K I + +I
Sbjct:    9 QQMVREMVKDFAKKEIAPHAEHVDQTGEFPMQT--FKKMGELGLMGIPFPEEYGGSGGDTISYALAVEEVGKACGSTGLSYAAAVSLGASPLYYFGTEEQKQTHLTPLASGTALGSFGLTEPNAGSDAGGTQTKAISNGDEYVINGEKCWITNASYARTVIVTAVTGKNKDGKNIISALI 186          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADS_MOUSE (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acads PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.459e-23
Identity = 58/187 (31.02%), Postives = 95/187 (50.80%), Query Frame = 1
Query:  133 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            S+   +T    +++   FA + + P AA +D+ + FP      K MG   L  +  P+E          + IA+EEISRA  S G+    +++L +  +++ GS  QK +++    +G+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD    +KGI+AF++
Sbjct:   31 SVELPETHQMLRQTCRDFAEKELVPIAAQLDREHLFP--TAQVKKMGELGLLAMDVPEELSGAGLGYLAYSIALEEISRACASTGVIMSVNNSLYLGPILKFGSAQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFLV 215          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACDSB_MOUSE (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadsb PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 60/197 (30.46%), Postives = 108/197 (54.82%), Query Frame = 1
Query:  109 HSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            ++ AF+    L D+ ++  K++V +FA+E++AP  +++D+++   + V    + G F   L GI    +            + +EE+++   SV L     + +  N   +H S  QK  YLPKL++ E +G+  +SE  AGSD   MK +AD+    Y++NG+KMW ++   A+  +V+A  D  +G +GIT F++
Sbjct:   47 NAVAFAPLQTLTDE-EIMMKQTVKKFAQEHVAPLVSSMDENSKMEKSV----IQGLFQQGLMGIEVEAQYGGTEASFFCSVLVIEELAKVDASVALLCDIQNTIINNLFRKHASEEQKATYLPKLVT-EKLGSFCLSEAGAGSDSFAMKTRADKSGNYYVLNGSKMWISHAEHAELFLVFANVDPSSGYRGITCFLV 237          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADS_RAT (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acads PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1
Query:  133 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            S+   +T    +++   FA + + P AA +D+ + FP   +  K MG   L  +  P+E          + IA+EEISR   S G+    +++L +  +++ GS  QK +++    +G+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD    +KGI+AF++
Sbjct:   31 SVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFP--TSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFLV 215          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADS_PONAB (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=ACADS PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 60/187 (32.09%), Postives = 93/187 (49.73%), Query Frame = 1
Query:  133 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            S+   +T     ++   FA + + P AA +D+ + FP      K MG   L  +  P+E          + IAMEEISR   S G+    +++L +  +++ GS  QK K++    SG+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD    +KGI+AF++
Sbjct:   31 SVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFP--AAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQKWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKGISAFLV 215          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADS_BOVIN (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADS PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 60/188 (31.91%), Postives = 98/188 (52.13%), Query Frame = 1
Query:  133 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            S+   +T    +++   FA + + P AA +D+ + FP      K MG   L  +  P+E          + IAMEEISR   S G+    +++L +  +++ G+  QK +++    SG+ +G  A+SEP  GSD  G      R DG  ++++G K W TN   A  +VV+A TD    +KGI+AF++
Sbjct:   31 SVELPETHQMLRQTCRDFAEKELFPIAAQVDKEHRFP--AAQVKKMGELGLMAMNVPEELSGAGLDYLAYSIAMEEISRGCASTGVIMSVNNSLYLGPILKFGTKEQKQQWVAPFTSGDKIGCFALSEPGNGSD-AGAAATTARADGDSWVLSGTKAWITNAWEASAVVVFASTDRSLHNKGISAFLV 215          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADS_PIG (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADS PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 59/187 (31.55%), Postives = 94/187 (50.27%), Query Frame = 1
Query:  133 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            S+   +T    +++   FA + + P AA +D+ + FP+     K MG   L  +  P+E          + IAMEEISR   S G+    ++ L +  +++ GS  QK +++    SG+ VG  A+SEP  GSD       A      ++++G K W TN   A   VV+A TD    +KGI+AF++
Sbjct:   31 SVELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQV--KKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNFLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDAGAAATTAQADHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGISAFLV 215          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: FADE_BACSU (Probable acyl-CoA dehydrogenase OS=Bacillus subtilis GN=fadE PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 67/186 (36.02%), Postives = 92/186 (49.46%), Query Frame = 1
Query:  142 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            F D      ++   +  +++ P   +I+ ++ F   V L K  G   L G   P+E            +  E+ SRA GS  LSYGAH  +    +V  GS  QK KYLP L SGE + A A++EP +GSD +G K  A   + G  Y++ G K W TN   A   VVYAK D   G K  +AFI+
Sbjct:   30 FTDEHKMIAKTTEDYIEQDVLPHIDDIE-NHQFEHSVRLLKKAGELGLLGADVPEEYGGLGLDKISSALITEKFSRA-GSFSLSYGAHVGIGSLPIVFFGSEEQKKKYLPGLASGEKIAAYALTEPGSGSDALGAKTTAVLNEAGTHYVLTGEKQWITNSAFADVFVVYAKVD---GDK-FSAFIV 209          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACDSB_RAT (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadsb PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.131e-22
Identity = 62/187 (33.16%), Postives = 102/187 (54.55%), Query Frame = 1
Query:  142 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            F D  +  +++V +FA+E IAP  + +D+++   + V    + G F   + GI    +            + +EE+++   SV L      N  IN+L R HG+  QK  YLPKL++ E +G+  +SE  AGSD   +K +AD+    Y+ING+KMW +N   A+  +V+A  D  +G +GIT F++
Sbjct:   57 FTDEDIMMQKAVKKFAQEQIAPLVSTMDENSKMEKSV----IQGLFQQGMMGIEVEAKYGGTEASFLCSVLVIEELAKVDASVALLCDIQ-NTVINKLFRKHGTEEQKATYLPKLVT-EKLGSFCLSEAGAGSDSFALKTRADKSGNYYVINGSKMWISNAEHAELFLVFANVDPPSGYRGITCFLV 237          
The following BLAST results are available for this feature:
BLAST of CF503890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ACDB_BACSU1.968e-2836.11Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmg... [more]
ACDC_BACSU1.080e-2637.78Probable acyl-CoA dehydrogenase yngJ OS=Bacillus s... [more]
ACADS_MOUSE9.459e-2331.02Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACDSB_MOUSE1.235e-2230.46Short/branched chain specific acyl-CoA dehydrogena... [more]
ACADS_RAT1.235e-2230.48Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_PONAB1.235e-2232.09Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_BOVIN1.235e-2231.91Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_PIG2.107e-2231.55Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
FADE_BACSU4.694e-2236.02Probable acyl-CoA dehydrogenase OS=Bacillus subtil... [more]
ACDSB_RAT6.131e-2233.16Short/branched chain specific acyl-CoA dehydrogena... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-377 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503890 ID=CF503890; Name=CF503890; organism=Citrus sinensis; type=EST; length=694bp
CACAAAGAAAGGAGAGAAAGTAAAAAGGGAAAAAGGTGAGAGAGAAGAAT
GCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTACGAAGA
AGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTTGATGAC
ACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGAAAACAT
TGCTCCTCGTGCGGCAAACATTGACCAATCAAATTCGTTCCCACAGGATG
TTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGGAATAACAGCT
CCACAGGAATATGGAGGGCTTGGACTTGGTTACTTGTATCATTGCATAGC
AATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTG
CCCATTCTAATTTGTGCATCAATCAATTGGTGAGGCATGGAAGCCCTGCT
CAGAAAGACAAGTACTTGCCCAAGCTCATTAGTGGAGAACATGTAGGTGC
TCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCATGAAAT
GCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGGGAACAAGATG
TGGTGCACCAATGGTCCAGTTGCTCAAACGTTGGTTGTTTACGCAAAAAC
AGACATTAAAGCTGGCTCGAAAGGAATCACAGCATTTATCATAG
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