CF503890

Overview
NameCF503890
Unique NameCF503890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig504 contig Csv1_Contig504:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADS_HUMAN (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADS PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.131e-22
Identity = 59/187 (31.55%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  133 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            S+   +T     ++   FA + + P AA +D+ + FP      K MG   L  +  P+E          + IAMEEISR   S G+    +++L +  +++ GS  QK  ++    SG+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD    +KGI+AF++
Sbjct:   31 SVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFP--AAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKGISAFLV 215          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACDSB_BOVIN (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADSB PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 61/186 (32.80%), Postives = 96/186 (51.61%), Query Frame = 1
Query:  142 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            F D ++  K +V +FA+E +AP  + +D+ +   + V    + G F   L GI    +            + +EE+++   SV L     + L    + ++G+  QK  YLPKL + E   ++ +SE  AGSD   MK +AD+    YIING+KMW ++  +A   VV A  D  AG KGIT F++
Sbjct:   57 FTDEEMMIKSAVKKFAQEQVAPFVSKMDEDSKMEKSV----IQGLFQQGLMGIEIDTKYGGTGASFFSSVLVIEELAKVDASVALVCDIQNTLINRMIGKYGTEEQKATYLPKLAT-EKASSICISETGAGSDSFAMKTRADKKGDYYIINGSKMWISSAEIAGLFVVMANADFSAGYKGITCFLV 237          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACDSB_PONAB (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=ACADSB PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 64/187 (34.22%), Postives = 100/187 (53.48%), Query Frame = 1
Query:  142 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            F D ++  K SV +FA+E IAP  + +D+++   + V    + G F   L GI    E            + +EE+++   SV + +    N  IN L+R HG+  QK  YLP+L + E VG+  +SE  AGSD   +K +AD+    Y++NG+KMW ++   A   +V A  D   G KGIT+F++
Sbjct:   57 FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSV----IQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAV-FCEIQNTLINTLIRKHGTEEQKGTYLPQLTT-EKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLV 237          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACDSB_HUMAN (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADSB PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 64/187 (34.22%), Postives = 100/187 (53.48%), Query Frame = 1
Query:  142 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            F D ++  K SV +FA+E IAP  + +D+++   + V    + G F   L GI    E            + +EE+++   SV + +    N  IN L+R HG+  QK  YLP+L + E VG+  +SE  AGSD   +K +AD+    Y++NG+KMW ++   A   +V A  D   G KGIT+F++
Sbjct:   57 FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSV----IQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAV-FCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLV 237          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADM_DROME (Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG12262 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 70/196 (35.71%), Postives = 98/196 (50.00%), Query Frame = 1
Query:  124 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAH-SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT--DIKA-GSKGITAFII 693
            + TS    + QLQ +E   +F RE I P AA  D+S  +P  +    W+L G  N H    P +           C++ EE+  A G  G+      S L    ++  G+  QK KYL +L+    V A  ++EP AGSDV G+K +A++    ++ING KMW TNG VA    V A+T  D K   SK  T FI+
Sbjct:   31 NGTSFALTEDQLQLQELARKFTREEIIPVAAQYDKSGEYPWPIIKKAWEL-GLMNNH---IPADIGGLDLDVFTTCLSAEEL--AYGCTGIMTALEASGLGQTPVILSGNKEQKKKYLGRLLEEPLVAAYCVTEPGAGSDVSGIKTRAEKKGDEWVINGQKMWITNGGVANWYFVLARTNPDPKCPPSKAFTGFIV 220          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACDS_MEGEL (Acyl-CoA dehydrogenase, short-chain specific OS=Megasphaera elsdenii PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 47/119 (39.50%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  340 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG-YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            + +A+EE+++    V ++  A  +LC N + + G+ AQK+K+L  L+ G  +GA  ++EPNAG+D  G +  A + D G Y +NG+K++ TNG  A   +V+A TD   G+ GITAFI+
Sbjct:   72 YILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFIL 190          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACAD9_HUMAN (Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Homo sapiens GN=ACAD9 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 71/217 (32.72%), Postives = 105/217 (48.39%), Query Frame = 1
Query:   70 RSLCASFFTKKQKHSAAFSSTSLLFDDTQL--QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG--GYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-----ITAFII 693
            R+     F  K K    F    +  D+     QF   V +F  E +  R   IDQ    P D  L KL  +  L G+  P+E          +   + EI    GS+ ++  AH  + +  ++  G+  QK KYLPKL SGEH+ A  ++EP +GSD   ++ +A   +    YI+NG+K+W TNG +A    V+AKT++   S G     ITAFI+
Sbjct:   37 RAFAKELFLGKIKKKEVFPFPEVSQDELNEINQFLGPVEKFFTEEVDSR--KIDQEGKIP-DETLEKLK-SLGLFGLQVPEEYGGLGFSNTMYS-RLGEIISMDGSITVTLAAHQAIGLKGIILAGTEEQKAKYLPKLASGEHIAAFCLTEPASGSDAASIRSRATLSEDKKHYILNGSKVWITNGGLANIFTVFAKTEV-VDSDGSVKDKITAFIV 247          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACDSB_DICDI (Probable short/branched chain specific acyl-CoA dehydrogenase OS=Dictyostelium discoideum GN=acadsb PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 61/189 (32.28%), Postives = 96/189 (50.79%), Query Frame = 1
Query:  130 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            T+L  ++T L  KE+V  FA E + P    +D+++   +   L K + + NL GI                 IA+EE+++   ++ +     + L  N + R+GS  Q++KYL  L +   VG+  +SE  +GSD   +  +A R  DG +++NG K W TN   A   +V A  D   G KGITAFI+
Sbjct:   33 TTLSEEETLL--KETVANFANEKVRPLVKVMDETSELNK--GLLKDLFDMNLMGIDISDSYGGANMNFMGSIIAIEELAKVDPAISVIVDVQNTLVNNCINRYGSIQQREKYLSMLATNT-VGSFCLSESGSGSDAFALATRAVRQSDGTFVLNGTKQWITNAKEAGVFIVMANVDPSQGYKGITAFIV 216          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADL_MOUSE (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadl PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 52/179 (29.05%), Postives = 99/179 (55.31%), Query Frame = 1
Query:  163 FKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS--KGITAFII 693
            F+ESV +F +E + P     +++    ++V  W+  G   L GI   ++            +  EE    S   G  +  HS++ +  +  +G+  Q +K++P++ +G+ +GA+AM+EP AGSD+ G++  A R    +I+NG+K++ TNG ++  ++V A T+ +A S   GI+ F++
Sbjct:   60 FRESVRKFFQEEVIPHHTEWEKAGEVSREV--WEKAGKQGLLGINIAEKHGGIGGDLLSTAVTWEE-QAYSNCTGPGFSLHSDIVMPYIANYGTKEQIEKFIPQMTAGKCIGAIAMTEPGAGSDLQGVRTNAKRSGSDWILNGSKVFITNGWLSDLVIVVAVTNREARSPAHGISLFLV 235          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADL_HUMAN (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADL PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 51/179 (28.49%), Postives = 100/179 (55.87%), Query Frame = 1
Query:  163 FKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS--KGITAFII 693
            F++SV +F +E + P  +  +++    ++V  W+  G   L G+   +             I  EE + ++ S G  +  HS + ++ +  HGS  Q   ++P++ +G+ +GA+AM+EP AGSD+ G+K  A +    +I+NG+K++ +NG ++  ++V A T+ +A S   GI+ F++
Sbjct:   60 FRKSVRKFFQEEVIPHHSEWEKAGEVSREV--WEKAGKQGLLGVNIAEHLGGIGGDLYSAAIVWEEQAYSNCS-GPGFSIHSGIVMSYITNHGSEEQIKHFIPQMTAGKCIGAIAMTEPGAGSDLQGIKTNAKKDGSDWILNGSKVFISNGSLSDVVIVVAVTNHEAPSPAHGISLFLV 235          
The following BLAST results are available for this feature:
BLAST of CF503890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ACADS_HUMAN6.131e-2231.55Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACDSB_BOVIN8.007e-2232.80Short/branched chain specific acyl-CoA dehydrogena... [more]
ACDSB_PONAB1.784e-2134.22Short/branched chain specific acyl-CoA dehydrogena... [more]
ACDSB_HUMAN2.330e-2134.22Short/branched chain specific acyl-CoA dehydrogena... [more]
ACADM_DROME4.394e-2035.71Probable medium-chain specific acyl-CoA dehydrogen... [more]
ACDS_MEGEL1.670e-1939.50Acyl-CoA dehydrogenase, short-chain specific OS=Me... [more]
ACAD9_HUMAN1.670e-1932.72Acyl-CoA dehydrogenase family member 9, mitochondr... [more]
ACDSB_DICDI1.082e-1832.28Probable short/branched chain specific acyl-CoA de... [more]
ACADL_MOUSE1.082e-1829.05Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
ACADL_HUMAN3.149e-1828.49Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-377 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503890 ID=CF503890; Name=CF503890; organism=Citrus sinensis; type=EST; length=694bp
CACAAAGAAAGGAGAGAAAGTAAAAAGGGAAAAAGGTGAGAGAGAAGAAT
GCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTACGAAGA
AGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTTGATGAC
ACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGAAAACAT
TGCTCCTCGTGCGGCAAACATTGACCAATCAAATTCGTTCCCACAGGATG
TTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGGAATAACAGCT
CCACAGGAATATGGAGGGCTTGGACTTGGTTACTTGTATCATTGCATAGC
AATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTG
CCCATTCTAATTTGTGCATCAATCAATTGGTGAGGCATGGAAGCCCTGCT
CAGAAAGACAAGTACTTGCCCAAGCTCATTAGTGGAGAACATGTAGGTGC
TCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCATGAAAT
GCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGGGAACAAGATG
TGGTGCACCAATGGTCCAGTTGCTCAAACGTTGGTTGTTTACGCAAAAAC
AGACATTAAAGCTGGCTCGAAAGGAATCACAGCATTTATCATAG
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