CF503890

Overview
NameCF503890
Unique NameCF503890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig504 contig Csv1_Contig504:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: GCDH_DICDI (Glutaryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gcdh PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 56/195 (28.72%), Postives = 95/195 (48.72%), Query Frame = 1
Query:  127 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD-GGYIINGNKMWCTNGPVAQTLVVYAKTD--------IKAGSKGITA 684
            S   L  + ++  ++ V +F ++ + PR     +   F +++   +  G   + G T P               A+E++     S   +    S+L ++ +   G+ AQK KYL  L SG+ VG   ++EPNAGSD  GM+ +A +   G Y++NG K W TN P+A   VV+AK +        ++ G KG++A
Sbjct:   44 SLESLLTEEEVMIRDQVNKFCQDELMPRIQMAYRDEKFDREI--MREYGKMGMLGATIPAYGGVSHVAYGLMANAVEKVDSGYRS---AMSVQSSLVMHPINTFGTDAQKSKYLDGLASGDLVGCFGLTEPNAGSDPAGMQTRAVKNSAGNYVLNGTKTWITNSPIADVFVVWAKVENGDIRGFVLEKGMKGLSA 233          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADM_MACFA (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADM PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 67/206 (32.52%), Postives = 97/206 (47.09%), Query Frame = 1
Query:   94 TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD---IKAGSKGITAFII 693
            TK  +        S  F + Q +F+ +  +FARE I P AA  D++  +P  +    W+L G  N H    PQ            C+  EE+  A G  G+      N L    ++  G+  QK KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D       +K  T FI+
Sbjct:   25 TKADRQREPGLGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNPH---IPQNCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNEQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKASWYFLLARSDPDPKAPANKAFTGFIV 224          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADL_PIG (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADL PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 53/179 (29.61%), Postives = 97/179 (54.19%), Query Frame = 1
Query:  163 FKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS--KGITAFII 693
            F+ESV +F +E + P  A  +++    ++  LW+  G   L GI   +             I  EE    S   G  +  HS++ +  +  +GS  Q   ++P++ +G+ +GA+AM+EP AGSD+ G++  A +    +I+NG+K++ TNG ++  ++V A T+ +A S   GI+ F++
Sbjct:   60 FRESVRKFFQEEVIPHHAEWEKAGEVSRE--LWEKAGKQGLLGINIAERHGGIGGDLYSAAIVWEE-QAYSNCTGPGFSLHSDIVMPYIANYGSEEQIKHFIPQMTAGKCIGAIAMTEPGAGSDLQGVRTNAKKDGSDWILNGSKVFITNGWLSDVVIVVAVTNREARSPAHGISLFLV 235          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADV_HUMAN (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADVL PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 56/189 (29.63%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  169 ESVGQFARENIAPRAANIDQSNSFPQDVNL-------WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-----ITAFII 693
            E   QF +E + P +   ++ N   ++  L       W+ +      G+  P E          +   +E +      VG++ GAH ++    ++  G+ AQK+KYLPKL SGE V A  ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +   + G     ITAF++
Sbjct:   96 EEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVV 284          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADM_PANTR (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pan troglodytes GN=ACADM PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 66/206 (32.04%), Postives = 97/206 (47.09%), Query Frame = 1
Query:   94 TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD---IKAGSKGITAFII 693
            TK  +        S  F + Q +F+ +  +FARE I P AA  D++  +P  +    W+L G  N H    P+            C+  EE+  A G  G+      N L    ++  G+  QK KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D       +K  T FI+
Sbjct:   25 TKANRQREPGLGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPENCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIV 224          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADM_HUMAN (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADM PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 66/206 (32.04%), Postives = 97/206 (47.09%), Query Frame = 1
Query:   94 TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD---IKAGSKGITAFII 693
            TK  +        S  F + Q +F+ +  +FARE I P AA  D++  +P  +    W+L G  N H    P+            C+  EE+  A G  G+      N L    ++  G+  QK KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D       +K  T FI+
Sbjct:   25 TKANRQREPGLGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPENCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIV 224          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACAD9_MOUSE (Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Mus musculus GN=Acad9 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 63/184 (34.24%), Postives = 96/184 (52.17%), Query Frame = 1
Query:  160 QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDI--KAGSK--GITAFII 693
            QF   + +F  E +  R   IDQ    P D  L KL  +  L GI  P+E          +   + EI     S+ ++  AH  + +  ++  G+  QK KYLPKL SGEH+ A  ++EP +GSD   ++ +A   +    +I+NG+K+W TNG +A    V+AKT++    GSK   +TAFI+
Sbjct:   73 QFVGPLEKFFTEEVDSR--KIDQEGKIPVDT-LEKLK-SLGLFGIQVPEEYGGLGLSNTMYA-RLGEIISLDASITVTLAAHQAIGLKGIILVGNDEQKAKYLPKLSSGEHIAAFCLTEPASGSDAASIQTRATLSEDKKYFILNGSKVWITNGGLANIFTVFAKTEVVDSDGSKTDKMTAFIV 251          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADV_RAT (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadvl PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.015e-18
Identity = 66/219 (30.14%), Postives = 106/219 (48.40%), Query Frame = 1
Query:   67 ARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQF-KESVGQFAR--ENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-----ITAFII 693
            ++S     F  +      F   S+L ++ Q QF KE VG  AR  E +   A N          +   K +G F   G+  P E          +    E +      V ++ GAH ++    ++ +G+ AQK+KYLP++ SG+ + A  ++EP++GSDV  ++  A     G  Y +NG+K+W +NG +A    V+AKT IK  + G     ITAF++
Sbjct:   70 SKSFAVGMFKGQLTTDQVFPYPSVL-NEGQTQFLKELVGPVARFFEEVNDPAKNDSLEKVEEDTLQGLKELGAF---GLQVPSELGGLGLSNTQYARLAEIVGMHDLGVSVTLGAHQSIGFKGILLYGTKAQKEKYLPRVASGQALAAFCLTEPSSGSDVASIRSSAVPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPIKDAATGAVKEKITAFVV 284          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADM_BOVIN (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADM PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.015e-18
Identity = 65/196 (33.16%), Postives = 96/196 (48.98%), Query Frame = 1
Query:  124 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD---IKAGSKGITAFII 693
            S  S  F + Q +F+ +  +FARE I P AA  D++  +P  +    W+L G  N H    P+            C+  EE+  A G  G+     +N L    ++  G+  Q+ KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D       SK  T FI+
Sbjct:   35 SGFSFEFTEQQKEFQATARKFAREEIIPLAAEYDKTGEYPVPLIKRAWEL-GLMNTH---IPESCGGLGLGTFDSCLISEEL--AYGCTGVQTAIEANSLGQMPVIIAGNDQQQKKYLGRMTEEPLMCAYCVTEPVAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIV 224          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADL_RAT (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadl PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.015e-18
Identity = 51/179 (28.49%), Postives = 99/179 (55.31%), Query Frame = 1
Query:  163 FKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS--KGITAFII 693
            F+ESV +F +E + P     +++    ++  LW+  G   L GI   ++            +  EE    S   G  +  HS++ +  +  +G+  Q ++++P++ +G+ +GA+AM+EP AGSD+ G++  A R    +I+NG+K++ TNG ++  ++V A T+ +A S   GI+ F++
Sbjct:   60 FRESVRKFFQEEVIPYHEEWEKAGEVSRE--LWEKAGKQGLLGINIAEKHGGIGGDLLSTAVTWEE-QAYSNCTGPGFSLHSDIVMPYIANYGTKEQIEQFIPQMTAGKCIGAIAMTEPGAGSDLQGVRTNAKRSGSDWILNGSKVFITNGWLSDLVIVVAVTNREARSPAHGISLFLV 235          
The following BLAST results are available for this feature:
BLAST of CF503890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
GCDH_DICDI4.112e-1828.72Glutaryl-CoA dehydrogenase, mitochondrial OS=Dicty... [more]
ACADM_MACFA4.112e-1832.52Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADL_PIG4.112e-1829.61Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
ACADV_HUMAN5.371e-1829.63Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADM_PANTR5.371e-1832.04Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_HUMAN5.371e-1832.04Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACAD9_MOUSE5.371e-1834.24Acyl-CoA dehydrogenase family member 9, mitochondr... [more]
ACADV_RAT7.015e-1830.14Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADM_BOVIN7.015e-1833.16Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADL_RAT7.015e-1828.49Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-377 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503890 ID=CF503890; Name=CF503890; organism=Citrus sinensis; type=EST; length=694bp
CACAAAGAAAGGAGAGAAAGTAAAAAGGGAAAAAGGTGAGAGAGAAGAAT
GCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTACGAAGA
AGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTTGATGAC
ACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGAAAACAT
TGCTCCTCGTGCGGCAAACATTGACCAATCAAATTCGTTCCCACAGGATG
TTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGGAATAACAGCT
CCACAGGAATATGGAGGGCTTGGACTTGGTTACTTGTATCATTGCATAGC
AATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTG
CCCATTCTAATTTGTGCATCAATCAATTGGTGAGGCATGGAAGCCCTGCT
CAGAAAGACAAGTACTTGCCCAAGCTCATTAGTGGAGAACATGTAGGTGC
TCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCATGAAAT
GCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGGGAACAAGATG
TGGTGCACCAATGGTCCAGTTGCTCAAACGTTGGTTGTTTACGCAAAAAC
AGACATTAAAGCTGGCTCGAAAGGAATCACAGCATTTATCATAG
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