CF503890

Overview
NameCF503890
Unique NameCF503890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig504 contig Csv1_Contig504:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACDP_MYCLE (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium leprae GN=fadE25 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 58/178 (32.58%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  160 QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            + + ++   A + IAP AA++DQ   FP++         FN   I  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A TD   G+ GI+AFI+
Sbjct:   21 ELRATIRALAEKEIAPHAADVDQRARFPEEALAALNASGFN--AIHVPEEYGGQGADSVAACIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPSLAAEGAMASYALSEREAGSDAASMRTRAKADGDDWILNGFKCWITNGGKSTWYTVMAVTDPDKGANGISAFIV 195          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADV_BOVIN (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADVL PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 64/218 (29.36%), Postives = 100/218 (45.87%), Query Frame = 1
Query:   67 ARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFAR--ENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-----ITAFII 693
            ++S     F  +      F   S+L +D     KE VG   R  E +   A N          +   K +G F   G+  P E          +   +E +      VG+  GAH ++    ++  G+ AQK+KYLPKL SGE + A  ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +   + G     ITAF++
Sbjct:   70 SKSFAVGTFKGQLTTDQVFPYPSVLNEDQTQFLKELVGPVTRFFEEVNDAAKNDMLERVEETTMQGLKELGAF---GLQVPNELGGVGLCNTQYARLVEIVGMYDLGVGIVLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETIAAFCLTEPSSGSDAASIRSSAVPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPVTDTATGAVKEKITAFVV 284          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADV_MOUSE (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadvl PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 62/218 (28.44%), Postives = 103/218 (47.25%), Query Frame = 1
Query:   67 ARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFAR--ENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-----ITAFII 693
            ++S     F  +      F   S+L ++     KE VG  AR  E +   A N          +   K +G F   G+  P E          +    E +      V ++ GAH ++    ++ +G+ AQ++KYLP++ SG+ + A  ++EP++GSDV  ++  A     G  Y +NG+K+W +NG +A    V+AKT IK  + G     ITAF++
Sbjct:   71 SKSFAVGMFKGQLTIDQVFPYPSVLSEEQAQFLKELVGPVARFFEEVNDPAKNDALEKVEDDTLQGLKELGAF---GLQVPSELGGLGLSNTQYARLAEIVGMHDLGVSVTLGAHQSIGFKGILLYGTKAQREKYLPRVASGQALAAFCLTEPSSGSDVASIRSSAIPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPIKDAATGAVKEKITAFVV 285          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADM_PIG (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADM PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 69/215 (32.09%), Postives = 102/215 (47.44%), Query Frame = 1
Query:   85 SFFTKKQKHSAAF------SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD---IKAGSKGITAFII 693
            S F  + +H+ A       S  S    + Q +F+ +  +FARE I P AA  D++  +P  +    W+L G  N H    P+            C+  EE+  A G  G+     +N L    L+  G+  Q+ KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D       SK  T FI+
Sbjct:   16 SHFGWRSQHTKAVPQCEPGSGFSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWEL-GLMNTH---IPESFGGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIV 224          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACDP_MYCTU (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium tuberculosis GN=fadE25 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 55/178 (30.90%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  160 QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            + + ++   A + IAP AA +D+   FP++  +      FN   +  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A TD   G+ GI+AF++
Sbjct:   21 EMRSAIRALAEKEIAPHAAEVDEKARFPEEALVALNSSGFN--AVHIPEEYGGQGADSVATCIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPALAAEGAMASYALSEREAGSDAASMRTRAKADGDHWILNGAKCWITNGGKSTWYTVMAVTDPDRGANGISAFMV 195          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACDP_MYCBO (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium bovis GN=fadE25 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 55/178 (30.90%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  160 QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            + + ++   A + IAP AA +D+   FP++  +      FN   +  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A TD   G+ GI+AF++
Sbjct:   21 EMRSAIRALAEKEIAPHAAEVDEKARFPEEALVALNSSGFN--AVHIPEEYGGQGADSVATCIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPALAAEGAMASYALSEREAGSDAASMRTRAKADGDHWILNGAKCWITNGGKSTWYTVMAVTDPDRGANGISAFMV 195          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADM_RAT (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadm PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 67/211 (31.75%), Postives = 98/211 (46.45%), Query Frame = 1
Query:   79 CASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT--DIKA-GSKGITAFII 693
            C +  TK           S    + Q +F+    +FARE I P A + D+S  +P  +    W+L G  N H    P+            C+  EE+  A G  G+     +N L    ++  G+  QK KYL ++     + A  ++EP+AGSDV G+K KA++    Y+ING KMW TNG  A    V  ++  D K   SK  T FI+
Sbjct:   20 CRAQHTKPSLKQEPGLGFSFELTEQQKEFQTIARKFAREEIIPVAPDYDKSGEYPFPLIKRAWEL-GLINTH---IPESCGGLGLGTFDACLITEEL--AYGCTGVQTAIEANSLGQMPVIIAGNDQQKKKYLGRMTEQPMMCAYCVTEPSAGSDVAGIKTKAEKKGDEYVINGQKMWITNGGKANWYFVLTRSNPDPKVPASKAFTGFIV 224          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADV_MACFA (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADVL PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 47/142 (33.10%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  289 GITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-----ITAFII 693
            G+  P E          +   +E +     +VG++ GAH ++    ++  G+ AQK+KYLPKL SGE + A  ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +   + G     ITAF++
Sbjct:  143 GLQVPSELGGVGLCNTQYARLVEIVGMHDLAVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETLAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVV 284          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADM_MOUSE (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadm PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 68/215 (31.63%), Postives = 101/215 (46.98%), Query Frame = 1
Query:   85 SFFTKKQKHSAAFSST------SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT--DIKA-GSKGITAFII 693
            S F  + +HS A          S    + Q +F+ +  +FARE I P A   D+S  +P  +    W+L G  N H    P+            C+  EE+  A G  G+     +N L    ++  G+  QK KYL ++     + A  ++EP+AGSDV  +K KA++    Y+ING KMW TNG  A    + A++  D K   SK  T FI+
Sbjct:   16 SHFECRTQHSKAAHKQEPGLGFSFELTEQQKEFQATARKFAREEIIPVAPEYDKSGEYPFPLIKRAWEL-GLINAH---IPESCGGLGLGTFDACLITEEL--AYGCTGVQTAIEANSLGQMPVILAGNDQQKKKYLGRMTEQPMMCAYCVTEPSAGSDVAAIKTKAEKKGDEYVINGQKMWITNGGKANWYFLLARSNPDPKVPASKAFTGFIV 224          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADL_MACFA (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADL PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.947e-16
Identity = 47/179 (26.26%), Postives = 100/179 (55.87%), Query Frame = 1
Query:  163 FKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS--KGITAFII 693
            F++S+ +F +E + P  +  +++    ++V  W+  G   L G+   +             +  EE + ++ S G  +  HS + ++ +  +GS  Q   ++P++ +G+ +GA+AM+E  AGSD+ G+K  A +    +I+NG+K++ +NG ++  ++V A T+ +A S  +GI+ F++
Sbjct:   60 FRKSIRKFFQEEVIPHHSEWEKAGEVSREV--WEKAGKQGLLGVNIAEHLGGIGGDLYYAAVVWEEQAYSNCS-GPGFSVHSGIVMSYITNYGSEEQIKHFIPQMTAGKCIGAIAMTELGAGSDLQGIKTNAKKDGSDWILNGSKVFISNGWLSDVVIVVAVTNHEAPSPARGISLFLV 235          
The following BLAST results are available for this feature:
BLAST of CF503890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ACDP_MYCLE9.162e-1832.58Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACADV_BOVIN1.197e-1729.36Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADV_MOUSE1.563e-1728.44Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADM_PIG1.563e-1732.09Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACDP_MYCTU4.547e-1730.90Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACDP_MYCBO4.547e-1730.90Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACADM_RAT1.013e-1631.75Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADV_MACFA1.323e-1633.10Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADM_MOUSE2.257e-1631.63Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADL_MACFA2.947e-1626.26Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-377 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503890 ID=CF503890; Name=CF503890; organism=Citrus sinensis; type=EST; length=694bp
CACAAAGAAAGGAGAGAAAGTAAAAAGGGAAAAAGGTGAGAGAGAAGAAT
GCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTACGAAGA
AGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTTGATGAC
ACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGAAAACAT
TGCTCCTCGTGCGGCAAACATTGACCAATCAAATTCGTTCCCACAGGATG
TTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGGAATAACAGCT
CCACAGGAATATGGAGGGCTTGGACTTGGTTACTTGTATCATTGCATAGC
AATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTG
CCCATTCTAATTTGTGCATCAATCAATTGGTGAGGCATGGAAGCCCTGCT
CAGAAAGACAAGTACTTGCCCAAGCTCATTAGTGGAGAACATGTAGGTGC
TCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCATGAAAT
GCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGGGAACAAGATG
TGGTGCACCAATGGTCCAGTTGCTCAAACGTTGGTTGTTTACGCAAAAAC
AGACATTAAAGCTGGCTCGAAAGGAATCACAGCATTTATCATAG
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