CF503890

Overview
NameCF503890
Unique NameCF503890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig504 contig Csv1_Contig504:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: IVD_CAEEL (Probable acyl coa dehydrogenase 6 OS=Caenorhabditis elegans GN=acdh-6 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 52/182 (28.57%), Postives = 90/182 (49.45%), Query Frame = 1
Query:  115 AAFSST--SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRAS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 651
            A  SST   +++D+     + S+ +  +E I P  A  ++S  +P    ++K++G   +  +  P +               E+I     GS+ +S    S++    L + GS + ++++L   I+G+ V ++A+SEP+AGSDV  ++  A R     IING+KMW TNG  A    V   T
Sbjct:   14 ATTSSTVKHMIYDEPHFAMQNSLAKLIKEKINPNVAQWEKSGRYPAHF-VFKMLGQLGVFAVNKPVDYGGTGRDFAMSIAIAEQIGAVDCGSIPMSVMVQSDMSTPALAQFGSDSLRNRFLRPSINGDLVSSIAVSEPHAGSDVSAIRTHARRYGSDLIINGSKMWITNGDQADWACVLVNT 194          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: GCDH_CAEEL (Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 61/220 (27.73%), Postives = 103/220 (46.82%), Query Frame = 1
Query:   61 LGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP-QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD----------IKAGSKGIT 681
            + +R L ++F+        AF  +  L +D +     S  ++ +E + PR     ++  F  D +L   MG+  L G  AP Q           + +   E+ R       +    ++L I  +  +GS  QK KY+P L SG+ +G   ++EPN GS+  GM+ KA  D     Y +NG+K W +N PV+  +VV+A++           ++ G KG+T
Sbjct:   12 IASRGLSSTFYQD------AFQLSDQLTEDER-SLMLSAREYCQERLLPRVTEAYRTEKF--DPSLIPEMGSMGLLG--APYQGYGCAGTSTVGYGLIAREVERVDSGYRSTMSVQTSLVIGPIYNYGSEDQKQKYIPDLASGKKIGCFGLTEPNHGSNPGGMETKATWDETTKTYKLNGSKTWISNSPVSDVMVVWARSARHNNKIKGFILERGMKGLT 220          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACADM_CAEEL (Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=T08G2.3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 60/201 (29.85%), Postives = 98/201 (48.76%), Query Frame = 1
Query:  118 AFSSTSLLFD--DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQ---EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHS-NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK---AGSKGITAFII 693
            A  S  + FD  +TQ + +++  +F+++ + P AA  D+S  FP     W+++   +  G+  PQ   +            + +E +S   G  G+  G    +L I  +   G+  QK KYL  L +   + +  ++EP AGSDV G+K K ++    YIING+K W T G  A+   V A++D        K  TAFI+
Sbjct:   21 ATQSRQISFDLSETQKEIQDAALKFSKDVLVPNAAKFDESGEFP-----WEIVRQAHSLGLMNPQIPEKYGGPGMTTLETALIVEALSY--GCTGIQLGIMGPSLAIAPVYISGNEEQKKKYLGALAAEPIIASYCVTEPGAGSDVNGVKTKCEKKGDEYIINGSKAWITGGGHAKWFFVLARSDPNPKTPAGKAFTAFIV 214          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACAD8_DICDI (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=acad8 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 49/182 (26.92%), Postives = 87/182 (47.80%), Query Frame = 1
Query:  148 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            + Q QF+     FA+E + P A   D+   FP+DV   +        GI   ++            I +E ++ A  S       H N+C   +  +G+  Q+ K+LP L+S E + +  ++EP +GSD   +  KA +    YI+NG+K + + G  ++  +V  +T  + G KGI+  ++
Sbjct:   41 EDQKQFQSMALDFAQEKMKPFAEKWDKEEYFPRDV--MREAAELGFGGIYVREDVGGSGLSRLDASIIIEALASADVSTTAFISIH-NMCAGLIDIYGTEEQRKKFLPSLVSMEKIASYCLTEPGSGSDAGSLSTKATKDGDHYILNGSKAFISGGGDSEVYLVMVRTGAEKGPKGISCLLV 219          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: GCDH_BOVIN (Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=GCDH PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 47/169 (27.81%), Postives = 84/169 (49.70%), Query Frame = 1
Query:  154 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 654
            ++  +++   + +E + PR    +++  F +++     MG   + G T  Q           + +   E+ R       +    S+L +  +  +GS  QK KYLP+L  GE +G   ++EPN GSD  GM+ +A  +     YI++G+K W TN PVA  L+V+A+ +
Sbjct:   64 EILIRDTFRTYCQERLMPRILLANRNEVFHREII--SEMGELGMLGPTI-QGYSCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMYPIYAYGSEEQKQKYLPRLAKGELLGCFGLTEPNHGSDPSGMETRARHNPSSRSYILSGSKTWITNSPVADLLIVWARCE 229          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACOX4_ARATH (Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  340 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAK 648
            + IA  EI+R   S       HS+L +  +   GS AQK+KYLP L     V   A++EP+ GSD  G+   A +V+GG+ ING K W  N   A  L+++A+
Sbjct:  118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFAR 220          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: GCDH_HUMAN (Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 47/187 (25.13%), Postives = 90/187 (48.13%), Query Frame = 1
Query:  154 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD--------IKAGSKGITA 684
            ++  +++   + +E + PR    +++  F +++     MG   + G T                +A  E+ R       +    S+L ++ +  +GS  Q+ KYLP+L  GE +G   ++EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+ +        ++ G +G++A
Sbjct:   64 EILIRDTFRTYCQERLMPRILLANRNEVFHREII--SEMGELGVLGPTIKGYGCAGVSSVAYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDGCIRGFLLEKGMRGLSA 247          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: GCDH_MACFA (Glutaryl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GCDH PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 47/187 (25.13%), Postives = 89/187 (47.59%), Query Frame = 1
Query:  154 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD--------IKAGSKGITA 684
            ++  +++   + +E + PR    +++  F +++     MG   + G T                +A  E+ R       +    S L ++ +  +GS  Q+ KYLP+L  GE +G   ++EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+ +        ++ G +G++A
Sbjct:   64 EILIRDTFRTYCQERLMPRILLANRNEVFHREII--SQMGELGVLGPTIKGYGCAGVSSVAYGLLA-RELERVDSGYRSAMSVQSPLVMHPIYAYGSEEQRQKYLPRLAKGELLGCFGLTEPNSGSDPSSMETRARYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDGRIRGFLLEKGMRGLSA 247          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: GCDH_MOUSE (Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  358 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 654
            E+ R            S+L ++ +  +GS  Q+ KYLP+L  GE +G   ++EPN GSD  GM+ +A  +  +  Y ++G K W TN PVA   +V+A+ +
Sbjct:  129 ELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPRLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTLSGTKTWITNSPVADLFIVWARCE 229          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: GCDH_PIG (Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 48/188 (25.53%), Postives = 90/188 (47.87%), Query Frame = 1
Query:  154 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKD-KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD--------IKAGSKGITA 684
            ++  +++   + +E++ PR    +++  F +++     MG   + G T                +A  E+ R       +    S+L ++ +  +GS  Q+  KYLP+L  GE +G   ++EPN GSD   M+ +A  +  +  Y +NG K W TN PVA   VV+A+ +        ++ G +G++A
Sbjct:   33 EILIRDTFRTYCQEHLMPRIVLANRNEVFHREII--SEMGELGVLGPTIKGYGCAGVSSVAYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQQQQKYLPRLAKGELLGCFGLTEPNHGSDPGSMETRALHNPSNRSYTLNGAKTWITNSPVADLFVVWARCEDNCIRGFLLEKGMRGLSA 217          
The following BLAST results are available for this feature:
BLAST of CF503890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
IVD_CAEEL3.849e-1628.57Probable acyl coa dehydrogenase 6 OS=Caenorhabditi... [more]
GCDH_CAEEL1.463e-1527.73Probable glutaryl-CoA dehydrogenase, mitochondrial... [more]
ACADM_CAEEL1.463e-1529.85Probable medium-chain specific acyl-CoA dehydrogen... [more]
ACAD8_DICDI2.495e-1526.92Isobutyryl-CoA dehydrogenase, mitochondrial OS=Dic... [more]
GCDH_BOVIN2.112e-1427.81Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos t... [more]
ACOX4_ARATH3.050e-1338.83Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidop... [more]
GCDH_HUMAN3.983e-1325.13Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo ... [more]
GCDH_MACFA5.202e-1325.13Glutaryl-CoA dehydrogenase, mitochondrial OS=Macac... [more]
GCDH_MOUSE4.404e-1234.65Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus m... [more]
GCDH_PIG1.674e-1125.53Glutaryl-CoA dehydrogenase, mitochondrial (Fragmen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-377 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503890 ID=CF503890; Name=CF503890; organism=Citrus sinensis; type=EST; length=694bp
CACAAAGAAAGGAGAGAAAGTAAAAAGGGAAAAAGGTGAGAGAGAAGAAT
GCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTACGAAGA
AGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTTGATGAC
ACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGAAAACAT
TGCTCCTCGTGCGGCAAACATTGACCAATCAAATTCGTTCCCACAGGATG
TTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGGAATAACAGCT
CCACAGGAATATGGAGGGCTTGGACTTGGTTACTTGTATCATTGCATAGC
AATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTG
CCCATTCTAATTTGTGCATCAATCAATTGGTGAGGCATGGAAGCCCTGCT
CAGAAAGACAAGTACTTGCCCAAGCTCATTAGTGGAGAACATGTAGGTGC
TCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCATGAAAT
GCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGGGAACAAGATG
TGGTGCACCAATGGTCCAGTTGCTCAAACGTTGGTTGTTTACGCAAAAAC
AGACATTAAAGCTGGCTCGAAAGGAATCACAGCATTTATCATAG
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