CF503893

Overview
NameCF503893
Unique NameCF503893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_BOVIN (H/ACA ribonucleoprotein complex subunit 2 OS=Bos taurus GN=NHP2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.871e-25
Identity = 51/113 (45.13%), Postives = 82/113 (72.57%), Query Frame = 3
Query:   63 ERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 401
            ERT H+     +V+L PIA+PLA ++L+++  K +++A + K ++RGVKEV K I +G KG+ V+AG+  PI+V  H+P++CE+ ++PY+Y+ SK DL  A  +KRPTC ++V
Sbjct:   21 ERTYHE----LLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFINKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV 129          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_PONAB (H/ACA ribonucleoprotein complex subunit 2 OS=Pongo abelii GN=NHP2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.091e-24
Identity = 55/151 (36.42%), Postives = 98/151 (64.90%), Query Frame = 3
Query:   45 GSDSEAER-TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 494
            G +++AE  +  +  ++ +V+  PIA+PLA ++L+++  K +++A + K ++RGVKEV K + +G KG+ V+AG+  PI+V  H+P++CE+ ++PY+Y+ SK DL  A  +KRPTC ++V  KP          D+ +  Y   +E+V+ L
Sbjct:   10 GPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV--KP---------HDEYQEAYDECLEEVQSL 149          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_HUMAN (H/ACA ribonucleoprotein complex subunit 2 OS=Homo sapiens GN=NHP2 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.861e-24
Identity = 48/120 (40.00%), Postives = 86/120 (71.67%), Query Frame = 3
Query:   45 GSDSEAER-TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 401
            G +++AE  +  +  ++ +V+  PIA+PLA ++L+++  K +++A + K ++RGVKEV K + +G KG+ V+AG+  PI+V  H+P++CE+ ++PY+Y+ SK DL  A  +KRPTC ++V
Sbjct:   10 GPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV 129          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_DROYA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Drosophila yakuba GN=NHP2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.687e-23
Identity = 51/123 (41.46%), Postives = 81/123 (65.85%), Query Frame = 3
Query:   93 KIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKC-LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKA 458
            K++ +  IAKP+AGKKL+K+  KLV++A +HK  L+ G+K+V   +R+G  G+C+ AG+++P+D++ H+P +CEE  IPY Y  S+ DL  A   KR T  +LV       +L  E +++L A
Sbjct:   33 KLIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYAYTPSRADLGAAMGVKRGTVALLVRQNDEYKDLYDEVKEELSA 155          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_DROME (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Drosophila melanogaster GN=NHP2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.687e-23
Identity = 51/123 (41.46%), Postives = 81/123 (65.85%), Query Frame = 3
Query:   93 KIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKC-LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKA 458
            K++ +  IAKP+AGKKL+K+  KLV++A +HK  L+ G+K+V   +R+G  G+C+ AG+++P+D++ H+P +CEE  IPY Y  S+ DL  A   KR T  +LV       +L  E +++L A
Sbjct:   33 KLIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNEEYKDLYDEVKEELSA 155          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NH2L1_CAEEL (NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.428e-16
Identity = 43/128 (33.59%), Postives = 72/128 (56.25%), Query Frame = 3
Query:  111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 494
            P A PLA   LS++ + LV++A  +K LK+G  E  K++ RG   + V+A +  P++++ H+P+LCE+ ++PY++V SK  L  A    RP              + Q E  +LK+    + EDV++L
Sbjct:    8 PKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIA---------ASITQNEGSQLKSQIQKIKEDVEKL 126          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: SNU13_SCHPO (13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.436e-16
Identity = 42/125 (33.60%), Postives = 71/125 (56.80%), Query Frame = 3
Query:   99 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 473
            +S+ P A PLA   L+++ L LV++A+ +K L++G  E  K++ RG     V+A +  PI+++ H+P+LCE+ ++PY++V SK  L  A    RP     + T      L Q +  KL  +  L+
Sbjct:    1 MSVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLLI 125          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: SNU13_USTMA (13 kDa ribonucleoprotein-associated protein OS=Ustilago maydis GN=SNU13 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.426e-16
Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 473
            P A PLA   L+ + L L+++A+ +K LK+G  E  K++ RG     V+A ++ PI+++ H+P+LCE+ ++PY++V SK  L  A    RP     V T   +    Q +  KL  +  L+
Sbjct:    6 PKAFPLADATLTNQILDLIQQASHYKQLKKGANEATKTLNRGICEFIVMAADVEPIEIVLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVVSASVTTNEARELQSQIQTVKLAIERLLI 126          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NH2L1_XENTR (NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.426e-16
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 410
            P A PLA  +L+K  L LV++AA +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ ++PY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIK 107          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NH2L1_DROME (NHP2-like protein 1 homolog OS=Drosophila melanogaster GN=hoip PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.426e-16
Identity = 40/128 (31.25%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 494
            P A PLA  +L+ + + L+++A  +  L++G  E  K++ RG   + V+AG+  PI+++ H+P+LCE+ ++PY++V SK+ L  A    RP     V T          E  +LK+  T + ++++ L
Sbjct:    7 PKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTT---------NEGSQLKSQITSIQQEIERL 125          
The following BLAST results are available for this feature:
BLAST of CF503893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
NHP2_BOVIN2.871e-2545.13H/ACA ribonucleoprotein complex subunit 2 OS=Bos t... [more]
NHP2_PONAB1.091e-2436.42H/ACA ribonucleoprotein complex subunit 2 OS=Pongo... [more]
NHP2_HUMAN1.861e-2440.00H/ACA ribonucleoprotein complex subunit 2 OS=Homo ... [more]
NHP2_DROYA2.687e-2341.46H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_DROME2.687e-2341.46H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NH2L1_CAEEL1.428e-1633.59NHP2-like protein 1 homolog OS=Caenorhabditis eleg... [more]
SNU13_SCHPO2.436e-1633.6013 kDa ribonucleoprotein-associated protein OS=Sch... [more]
SNU13_USTMA5.426e-1633.8813 kDa ribonucleoprotein-associated protein OS=Ust... [more]
NH2L1_XENTR5.426e-1639.00NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l... [more]
NH2L1_DROME5.426e-1631.25NHP2-like protein 1 homolog OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-380 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503893 ID=CF503893; Name=CF503893; organism=Citrus sinensis; type=EST; length=494bp
GTCTCTGTTTCGTGCAATTCATTGAGAACTGAAAAAAGAAAATGGGAAGC
GACAGCGAAGCAGAGAGAACCCCACATAAAGATGAGAAGAAGAAGATTGT
TAGTCTTGCTCCCATTGCTAAACCTCTAGCTGGCAAGAAGCTCTCCAAAA
GAACCCTCAAGCTTGTCCGTCGAGCTGCTGAACACAAATGCTTGAAGAGA
GGAGTGAAGGAAGTGGTCAAAAGTATCCGCCGTGGTCATAAAGGATTATG
TGTTATAGCTGGGAACATTAGTCCAATTGATGTCATCACTCACGTTCCTA
TCTTATGTGAAGAGTCTGATATTCCCTACATCTATGTTGCTTCAAAAGAG
GATCTTGCAAATGCAGGTGCCACAAAGAGGCCAACATGCTGTGTTTTGGT
GCTAACTAAGCCAACTAAGGGAGAACTAGGACAAGAGGAACAAGATAAGT
TGAAAGCTGATTATACCCTCGTTGTAGAGGATGTGAAGGAACTG
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