CF503893

Overview
NameCF503893
Unique NameCF503893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503893_ssr85 microsatellite CF503893_ssr85:85..96. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4756 contig Csv1_Contig4756:68..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NH2L1_XENLA (NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 38/100 (38.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 410
            P A PLA  +L+K  L LV+++A +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ ++PY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NH2L1_RAT (NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 2.693e-15
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 410
            P A PLA   L+K+ L LV+++  +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ ++PY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NH2L1_MOUSE (NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 2.693e-15
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 410
            P A PLA   L+K+ L LV+++  +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ ++PY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NH2L1_MACFA (NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2L1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.693e-15
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 410
            P A PLA   L+K+ L LV+++  +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ ++PY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NH2L1_HUMAN (NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 2.693e-15
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 410
            P A PLA   L+K+ L LV+++  +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ ++PY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NH2L1_BOVIN (NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 2.693e-15
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 410
            P A PLA   L+K+ L LV+++  +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ ++PY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: SNU13_CANGA (13 kDa ribonucleoprotein-associated protein OS=Candida glabrata GN=SNU13 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.594e-15
Identity = 40/121 (33.06%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 473
            P A PLA +KLS++ L +V++AA  + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ ++PY++V S+  L  A    RP     + T        Q    K K +  L+
Sbjct:    6 PKAFPLADEKLSQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKNQIYAVKDKIETLLI 126          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: SNU13_CRYNE (13 kDa ribonucleoprotein-associated protein OS=Cryptococcus neoformans GN=SNU13 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.023e-14
Identity = 35/103 (33.98%), Postives = 60/103 (58.25%), Query Frame = 3
Query:  111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTK 419
            P A PLA  +L+ + L L+++A  +K LK+G  E  K++ RG     V+  ++ PI+++ H+P+LCE+ ++PY+++ SK  L  A    RP     V T   +
Sbjct:    7 PKAFPLANAQLTNQILDLIQQAQHYKQLKKGANEATKTLNRGICEFIVMTADVEPIEIVLHLPLLCEDKNVPYVFLPSKTALGRACGVSRPVIAASVTTNEAR 109          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: SNU13_KLULA (13 kDa ribonucleoprotein-associated protein OS=Kluyveromyces lactis GN=SNU13 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.079e-14
Identity = 38/121 (31.40%), Postives = 65/121 (53.72%), Query Frame = 3
Query:  111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 473
            P A PLA   LS++ L +V++A+  + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ ++PY++V S+  L  A    RP     + T        Q    K K +  L+
Sbjct:    6 PKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETLLI 126          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NH2L1_DICDI (NHP2-like protein 1 homolog OS=Dictyostelium discoideum GN=DDB_G0282243 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.633e-14
Identity = 41/128 (32.03%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  117 AKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRP--TCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 494
            AKPLA  KL+   L L++++     LK+G  E  K++ R      V+A +  P++++ H+P+LCE+ +IPY++V+SK +L  A    RP   C V V           +++ +LK+  T V + +  L
Sbjct:   10 AKPLADSKLTLTILDLIQQSNNLGQLKKGANECTKAVSRSTAEFVVLAADAEPLEILLHIPLLCEDKNIPYVFVSSKSELGRACDVSRPVVACAVTV-----------DDKSQLKSQITNVKDSLDRL 126          
The following BLAST results are available for this feature:
BLAST of CF503893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
NH2L1_XENLA1.579e-1538.00NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE... [more]
NH2L1_RAT2.693e-1537.00NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1... [more]
NH2L1_MOUSE2.693e-1537.00NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2... [more]
NH2L1_MACFA2.693e-1537.00NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2... [more]
NH2L1_HUMAN2.693e-1537.00NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1... [more]
NH2L1_BOVIN2.693e-1537.00NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 S... [more]
SNU13_CANGA4.594e-1533.0613 kDa ribonucleoprotein-associated protein OS=Can... [more]
SNU13_CRYNE1.023e-1433.9813 kDa ribonucleoprotein-associated protein OS=Cry... [more]
SNU13_KLULA5.079e-1431.4013 kDa ribonucleoprotein-associated protein OS=Klu... [more]
NH2L1_DICDI6.633e-1432.03NHP2-like protein 1 homolog OS=Dictyostelium disco... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-380 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503893 ID=CF503893; Name=CF503893; organism=Citrus sinensis; type=EST; length=494bp
GTCTCTGTTTCGTGCAATTCATTGAGAACTGAAAAAAGAAAATGGGAAGC
GACAGCGAAGCAGAGAGAACCCCACATAAAGATGAGAAGAAGAAGATTGT
TAGTCTTGCTCCCATTGCTAAACCTCTAGCTGGCAAGAAGCTCTCCAAAA
GAACCCTCAAGCTTGTCCGTCGAGCTGCTGAACACAAATGCTTGAAGAGA
GGAGTGAAGGAAGTGGTCAAAAGTATCCGCCGTGGTCATAAAGGATTATG
TGTTATAGCTGGGAACATTAGTCCAATTGATGTCATCACTCACGTTCCTA
TCTTATGTGAAGAGTCTGATATTCCCTACATCTATGTTGCTTCAAAAGAG
GATCTTGCAAATGCAGGTGCCACAAAGAGGCCAACATGCTGTGTTTTGGT
GCTAACTAAGCCAACTAAGGGAGAACTAGGACAAGAGGAACAAGATAAGT
TGAAAGCTGATTATACCCTCGTTGTAGAGGATGTGAAGGAACTG
back to top