CF503893

Overview
NameCF503893
Unique NameCF503893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_SULIL (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   99 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 404
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_SULIK (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   99 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 404
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_SULIA (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain M.16.27) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   99 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 404
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_PYRKO (50S ribosomal protein L7Ae OS=Pyrococcus kodakaraensis GN=rpl7ae PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13
Identity = 34/107 (31.78%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  135 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 455
            ++L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPY+YV SK++L  A   + P   V ++      EL ++   K+K
Sbjct:   13 QELAEKALEAVEIARDTGRIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYVYVPSKKELGAAAGLEVPAASVAIIEPGKARELVEDIAMKVK 119          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_SULSO (50S ribosomal protein L7Ae OS=Sulfolobus solfataricus GN=rpl7ae PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.334e-13
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   99 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 404
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L +IA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_PYRFU (50S ribosomal protein L7Ae OS=Pyrococcus furiosus GN=rpl7ae PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 35/107 (32.71%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  135 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 455
            K+L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPYIYV SK++L  A   +     V ++      +L +E   K+K
Sbjct:   13 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVK 119          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_SULTO (50S ribosomal protein L7Ae OS=Sulfolobus tokodaii GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.634e-12
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  141 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA 365
            L+ + L  VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LCEE  IPY+YV SK+ L  A
Sbjct:   15 LANKVLDAVRKAKESGKIKKGTNETTKAVERGQAKLVVIATDVQPEEIVAHLPLLCEEKKIPYVYVPSKKALGEA 89          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_AERPE (50S ribosomal protein L7Ae OS=Aeropyrum pernix GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12
Identity = 35/105 (33.33%), Postives = 60/105 (57.14%), Query Frame = 3
Query:  141 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 455
            L+++  + V+RA E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV SK+ L  A   +     V ++       L +E  +K+K
Sbjct:   15 LAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEPGDAETLVREIVEKVK 119          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_PYRHO (50S ribosomal protein L7Ae OS=Pyrococcus horikoshii GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 34/107 (31.78%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  135 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 455
            K+L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPYIYV SK++L  A   +     V ++      +L +E   K++
Sbjct:   13 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVR 119          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_PYRAB (50S ribosomal protein L7Ae OS=Pyrococcus abyssi GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 34/107 (31.78%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  135 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 455
            K+L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPYIYV SK++L  A   +     V ++      +L +E   K++
Sbjct:   13 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVR 119          
The following BLAST results are available for this feature:
BLAST of CF503893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL7A_SULIL5.615e-1335.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULIK5.615e-1335.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULIA5.615e-1335.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_PYRKO5.615e-1331.7850S ribosomal protein L7Ae OS=Pyrococcus kodakarae... [more]
RL7A_SULSO7.334e-1334.3150S ribosomal protein L7Ae OS=Sulfolobus solfatari... [more]
RL7A_PYRFU1.251e-1232.7150S ribosomal protein L7Ae OS=Pyrococcus furiosus ... [more]
RL7A_SULTO1.634e-1242.6750S ribosomal protein L7Ae OS=Sulfolobus tokodaii ... [more]
RL7A_AERPE2.134e-1233.3350S ribosomal protein L7Ae OS=Aeropyrum pernix GN=... [more]
RL7A_PYRHO2.787e-1231.7850S ribosomal protein L7Ae OS=Pyrococcus horikoshi... [more]
RL7A_PYRAB2.787e-1231.7850S ribosomal protein L7Ae OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-380 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503893 ID=CF503893; Name=CF503893; organism=Citrus sinensis; type=EST; length=494bp
GTCTCTGTTTCGTGCAATTCATTGAGAACTGAAAAAAGAAAATGGGAAGC
GACAGCGAAGCAGAGAGAACCCCACATAAAGATGAGAAGAAGAAGATTGT
TAGTCTTGCTCCCATTGCTAAACCTCTAGCTGGCAAGAAGCTCTCCAAAA
GAACCCTCAAGCTTGTCCGTCGAGCTGCTGAACACAAATGCTTGAAGAGA
GGAGTGAAGGAAGTGGTCAAAAGTATCCGCCGTGGTCATAAAGGATTATG
TGTTATAGCTGGGAACATTAGTCCAATTGATGTCATCACTCACGTTCCTA
TCTTATGTGAAGAGTCTGATATTCCCTACATCTATGTTGCTTCAAAAGAG
GATCTTGCAAATGCAGGTGCCACAAAGAGGCCAACATGCTGTGTTTTGGT
GCTAACTAAGCCAACTAAGGGAGAACTAGGACAAGAGGAACAAGATAAGT
TGAAAGCTGATTATACCCTCGTTGTAGAGGATGTGAAGGAACTG
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