CF503893

Overview
NameCF503893
Unique NameCF503893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_ARCFU (50S ribosomal protein L7Ae OS=Archaeoglobus fulgidus GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = 3
Query:  141 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQE 437
            +    L L+ +  E   +K+G  E  K++ RG   L  IA ++ P +++ H+P+LCEE ++PYIYV SK DL  A   + P     ++    +GEL +E
Sbjct:   11 MQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAII---NEGELRKE 106          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_THEGJ (50S ribosomal protein L7Ae OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.640e-12
Identity = 34/107 (31.78%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  135 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 455
            ++L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPYIYV SK++L  A   +     V ++      EL ++   K+K
Sbjct:   13 QELAEKALEAVEIARDTGRIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGLEVAAASVAIIEPGKARELVEDIAMKVK 119          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_METJA (50S ribosomal protein L7Ae OS=Methanocaldococcus jannaschii GN=rpl7ae PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.640e-12
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  135 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGEL 428
            +++ K  L  V +A +   +K+G  EV K++ RG   L +IA ++ P +V+ H+P LCEE  IPY YVASK+DL  A   +     V ++ +    EL
Sbjct:   11 EEIQKELLDAVAKAQK---IKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGDAEEL 105          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_META3 (50S ribosomal protein L7Ae OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 30/92 (32.61%), Postives = 59/92 (64.13%), Query Frame = 3
Query:  135 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 410
            +++ ++T +++ ++ +   +K+G  EV K++ RG   L V+A ++ P +++ H+PI+CEE  IPY Y+A+KEDL  A   +  T  V ++ +
Sbjct:   11 QEMEEKTAEVLSKSEK---VKKGANEVTKAVERGTAKLVVLAKDVQPEEIVAHIPIICEEKGIPYTYIATKEDLGKAIGLEVSTAAVAIIAE 99          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_SULAC (50S ribosomal protein L7Ae OS=Sulfolobus acidocaldarius GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11
Identity = 29/77 (37.66%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  135 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA 365
            ++L+ + L+ V++A +   +K+G  E  K++ R    L VIA ++ P +++ H+P+LCEE  IPY+YV SK+ L  A
Sbjct:   13 QELADKVLEAVKKAKDSGKIKKGTNETTKAVERSQAKLVVIAEDVQPEEIVAHLPLLCEEKKIPYVYVPSKKSLGEA 89          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_PYRCJ (50S ribosomal protein L7Ae OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = 3
Query:  117 AKPLAGKK----------LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN-AGATKRPTCCVLVLTKPTKGEL 428
            A PL GK           ++++ L+++  A +   +K+G  E  K++ RG   L +IA ++ P +V+ H+P+LCEE  +PY+YV SKE L   AG        V++      GEL
Sbjct:   12 ANPLPGKPFYVRFEVPSDVAEKALEILSIARQTGKIKKGTNETTKAVERGLAKLVLIAEDVDPPEVVAHLPLLCEEKKVPYVYVPSKEKLGKAAGINVAAAAAVVIEAGQAAGEL 126          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_PICTO (50S ribosomal protein L7Ae OS=Picrophilus torridus GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.359e-11
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  141 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDL 356
            L K  L +V  + +   +++G  EVVKSI RG   L VIA ++SP +V+ ++P LCEE  +PY+YV  K DL
Sbjct:   13 LEKAVLDMVENSYKTGKVRKGTNEVVKSIERGESKLVVIAEDVSPAEVVYYLPTLCEERKVPYVYVKKKSDL 84          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_THEVO (50S ribosomal protein L7Ae OS=Thermoplasma volcanium GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  141 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN 362
            +S++ L LV  A     +K+G  EV+KSI RG   L VIA +++P +V+ ++P LCE+  +PY+YV  K DL +
Sbjct:   14 VSQKALDLVESAFRSGKIKKGTNEVIKSIERGESKLVVIAEDVNPPEVVYYLPSLCEDKKVPYVYVKKKADLGS 87          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_METMP (50S ribosomal protein L7Ae OS=Methanococcus maripaludis GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 35/110 (31.82%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  135 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQ--EEQDKLKA 458
            ++L ++T ++V  A +   +K+G  EV K++ +G   L VIA ++ P +++ H+P++C+E  I Y Y ++KE L  A   + PT  + V+ + +  EL    E+ + LKA
Sbjct:   11 QELEEKTAEVVANAEK---IKKGANEVTKAVEKGIAKLVVIAQDVQPEEIVAHIPVICDEKGIAYSYSSTKEALGKAAGLEVPTSAIAVVAEGSADELKDLVEKLNGLKA 117          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_PYRAE (50S ribosomal protein L7Ae OS=Pyrobaculum aerophilum GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 33/97 (34.02%), Postives = 56/97 (57.73%), Query Frame = 3
Query:  141 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN-AGATKRPTCCVLVLTKPTKGEL 428
            ++++ L+++  A +   +K+G  E  K++ RG   L +IA ++ P +V+ H+P+LCEE  +PY+YV SKE L   AG        V++      GEL
Sbjct:   30 VAEKALEILSIARQTGKIKKGTNETTKAVERGLAKLVLIAEDVDPPEVVAHLPLLCEEKKVPYVYVPSKEKLGKAAGINVSAAAAVVIEPGQAAGEL 126          
The following BLAST results are available for this feature:
BLAST of CF503893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL7A_ARCFU2.787e-1234.3450S ribosomal protein L7Ae OS=Archaeoglobus fulgid... [more]
RL7A_THEGJ3.640e-1231.7850S ribosomal protein L7Ae OS=Thermococcus gammato... [more]
RL7A_METJA3.640e-1236.7350S ribosomal protein L7Ae OS=Methanocaldococcus j... [more]
RL7A_META34.754e-1232.6150S ribosomal protein L7Ae OS=Methanococcus aeolic... [more]
RL7A_SULAC1.059e-1137.6650S ribosomal protein L7Ae OS=Sulfolobus acidocald... [more]
RL7A_PYRCJ1.383e-1133.0450S ribosomal protein L7Ae OS=Pyrobaculum calidifo... [more]
RL7A_PICTO2.359e-1144.4450S ribosomal protein L7Ae OS=Picrophilus torridus... [more]
RL7A_THEVO3.081e-1141.8950S ribosomal protein L7Ae OS=Thermoplasma volcani... [more]
RL7A_METMP3.081e-1131.8250S ribosomal protein L7Ae OS=Methanococcus maripa... [more]
RL7A_PYRAE4.024e-1134.0250S ribosomal protein L7Ae OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-380 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503893 ID=CF503893; Name=CF503893; organism=Citrus sinensis; type=EST; length=494bp
GTCTCTGTTTCGTGCAATTCATTGAGAACTGAAAAAAGAAAATGGGAAGC
GACAGCGAAGCAGAGAGAACCCCACATAAAGATGAGAAGAAGAAGATTGT
TAGTCTTGCTCCCATTGCTAAACCTCTAGCTGGCAAGAAGCTCTCCAAAA
GAACCCTCAAGCTTGTCCGTCGAGCTGCTGAACACAAATGCTTGAAGAGA
GGAGTGAAGGAAGTGGTCAAAAGTATCCGCCGTGGTCATAAAGGATTATG
TGTTATAGCTGGGAACATTAGTCCAATTGATGTCATCACTCACGTTCCTA
TCTTATGTGAAGAGTCTGATATTCCCTACATCTATGTTGCTTCAAAAGAG
GATCTTGCAAATGCAGGTGCCACAAAGAGGCCAACATGCTGTGTTTTGGT
GCTAACTAAGCCAACTAAGGGAGAACTAGGACAAGAGGAACAAGATAAGT
TGAAAGCTGATTATACCCTCGTTGTAGAGGATGTGAAGGAACTG
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