CF503893

Overview
NameCF503893
Unique NameCF503893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_THENV (50S ribosomal protein L7Ae OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 33/97 (34.02%), Postives = 56/97 (57.73%), Query Frame = 3 
Query:  141 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN-AGATKRPTCCVLVLTKPTKGEL 428
            ++++ L+++  A +   +K+G  E  K++ RG   L +IA ++ P +V+ H+P+LCEE  +PY+YV SKE L   AG        V++      GEL
Sbjct:   30 VAEKALEVLSVAKQTGKIKKGTNEATKAVERGLAKLVLIAEDVDPPEVVAHLPLLCEEKKVPYVYVPSKEKLGKAAGINVSAAAAVVIEPGQAAGEL 126
[Close]
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: RL7A_METST (50S ribosomal protein L7Ae OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 40/120 (33.33%), Postives = 65/120 (54.17%), Query Frame = 3 
Query:  135 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 494
            K+++ +  + +  A +   + +G  EV K+I R +  L VIA +I P +++ H+PIL EE +IPY+Y+ +KE+L  A      T    ++     GE GQE  D+       +VE V EL
Sbjct:   13 KEIADKVYEALEIARDTGKIGKGTNEVTKNIERNNVALAVIAEDIEPAEIVAHLPILAEEKEIPYVYLPTKEELGEAAGLNVGTASACII---DAGE-GQELVDE-------IVEKVAEL 121
The following BLAST results are available for this feature:
BLAST of CF503893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL7A_THENV5.256e-1134.0250S ribosomal protein L7Ae OS=Thermoproteus neutro... [more]
RL7A_METST5.256e-1133.3350S ribosomal protein L7Ae OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-380 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503893 ID=CF503893; Name=CF503893; organism=Citrus sinensis; type=EST; length=494bp
GTCTCTGTTTCGTGCAATTCATTGAGAACTGAAAAAAGAAAATGGGAAGC
GACAGCGAAGCAGAGAGAACCCCACATAAAGATGAGAAGAAGAAGATTGT
TAGTCTTGCTCCCATTGCTAAACCTCTAGCTGGCAAGAAGCTCTCCAAAA
GAACCCTCAAGCTTGTCCGTCGAGCTGCTGAACACAAATGCTTGAAGAGA
GGAGTGAAGGAAGTGGTCAAAAGTATCCGCCGTGGTCATAAAGGATTATG
TGTTATAGCTGGGAACATTAGTCCAATTGATGTCATCACTCACGTTCCTA
TCTTATGTGAAGAGTCTGATATTCCCTACATCTATGTTGCTTCAAAAGAG
GATCTTGCAAATGCAGGTGCCACAAAGAGGCCAACATGCTGTGTTTTGGT
GCTAACTAAGCCAACTAAGGGAGAACTAGGACAAGAGGAACAAGATAAGT
TGAAAGCTGATTATACCCTCGTTGTAGAGGATGTGAAGGAACTG
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