CF503899

Overview
NameCF503899
Unique NameCF503899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: UGDH_CAEEL (UDP-glucose 6-dehydrogenase OS=Caenorhabditis elegans GN=sqv-4 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.953e-58
Identity = 112/181 (61.88%), Postives = 140/181 (77.35%), Query Frame = 2
Query:   56 KMVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH---NSKGIKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            K+ K+ C+GAGYVGGPT A+IA KCP I V VVD++ ++I  WNSD+LPIYEPGLD +V   RG+NLFFS+D+ K ++EAD++F+SVNTPTK  G G G A DL Y ES +R IA  +   KIVVEKSTVPVK AE+I  IL     N++ +KFQ+LSNPEFLAEGTA++DL NP+RVLIG
Sbjct:    8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIG 188          
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: TUAD_BACSU (UDP-glucose 6-dehydrogenase tuaD OS=Bacillus subtilis GN=tuaD PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.639e-26
Identity = 74/182 (40.66%), Postives = 101/182 (55.49%), Query Frame = 2
Query:   59 MVKICCIGAGYVG---GPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGL-DGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKG-IKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            M KI  IG GYVG   G   A I  K     V   DI  S+I +  +  +PIYEPGL D V K    + L F+ D+   +  +DI++++V TP    G      ADLTY ++AA+ I +     K++V KSTVPV T + ++ I+   SKG   F ++SNPEFL EG+AI D  N  R +IG
Sbjct:    1 MKKIAVIGTGYVGLVSGTCFAEIGNK-----VVCCDIDESKIRSLKNGVIPIYEPGLADLVEKNVLDQRLTFTNDIPSAIRASDIIYIAVGTPMSKTG-----EADLTYVKAAAKTIGEHLNGYKVIVNKSTVPVGTGKLVQSIVQKASKGRYSFDVVSNPEFLREGSAIHDTMNMERAVIG 172          
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: UDG_RHIME (UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti GN=rkpK PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 5.621e-25
Identity = 70/177 (39.55%), Postives = 105/177 (59.32%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVV-KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            +KI  IGAGYVG   ++ +       +V  VD    +I+A    Q+PI+EPGLD +V        L F+ D++  V+ +D+VF++V TP++    G G A DL+Y  +AAR IA   +   +VV KSTVPV T + +E+I+   +      ++SNPEFL EG AI+D   P+R++IG
Sbjct:    1 MKITMIGAGYVG--LVSGVCFADFGHDVVCVDKDEGKISALKKGQIPIFEPGLDHLVASNVASGRLNFTDDLKTAVAASDVVFIAVGTPSRR---GDGHA-DLSYVYAAAREIAANLQGFTVVVTKSTVPVGTGDEVERIIRETNPAADVTVVSNPEFLREGAAIEDFKRPDRIVIG 171          
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: Y1054_METJA (Uncharacterized protein MJ1054 OS=Methanocaldococcus jannaschii GN=MJ1054 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.758e-24
Identity = 68/178 (38.20%), Postives = 102/178 (57.30%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSD-KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            + I  IG GYVG   +  + L     +V  +DI  S++ A N  + P+YE GL+G++K+   KNL F+T   K + ++D++F+ V TP    G      ADL +  SA   I + + K D K++V KSTVPV T   ++++L    K     ++SNPEFL EG A+ D FNP RV++G
Sbjct:    1 MNISVIGTGYVG--LIQAVGLAEFGFDVVGIDIDESKVKALNRGECPLYEEGLEGLLKKHVNKNLTFTTSY-KPIKDSDVIFLCVGTPQDKDG-----NADLRFLFSAVEKIKETIDKEDYKVIVIKSTVPVGTNRRVKELL----KDYNVDVVSNPEFLREGIAVYDFFNPERVILG 166          
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: YWQF_BACSU (UDP-glucose 6-dehydrogenase ywqF OS=Bacillus subtilis GN=ywqF PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.028e-23
Identity = 68/178 (38.20%), Postives = 101/178 (56.74%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVV-KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILT-HNSKGIKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            + I  IG GYVG   +  ++L      V  +DI   +I+       PI+EPGL+ ++ K      L F T  EK +++ADI+F++V TP K+ G      A+L     AA+ IA   K D +VV KSTVPV T + I  ++T H ++ +   + SNPEFL EG+AI D F+ +R++IG
Sbjct:    1 MNITVIGTGYVG--LVTGVSLSEIGHHVTCIDIDAHKIDEMRKGISPIFEPGLEELMRKNTADGRLNFETSYEKGLAQADIIFIAVGTPQKSDG-----HANLEQITDAAKRIAKHVKRDTVVVTKSTVPVGTNDLINGLITEHLAEPVSISVASNPEFLREGSAIYDTFHGDRIVIG 171          
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: UDG_PSEAE (UDP-glucose 6-dehydrogenase OS=Pseudomonas aeruginosa GN=udg PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 6.871e-23
Identity = 66/181 (36.46%), Postives = 102/181 (56.35%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKI----LTHNSKGIKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            +++C IGAGYVG  T A  A      +V  V+    R+      ++PIYEPGL+ +++ Q     L F+  + + +++A++VF++V TP    G     +ADL++  + A  +    +   IVV KSTVPV TAE +E+I    L    K  +  + SNPEFL EG+A+ D   P+RV+IG
Sbjct:    1 MRLCVIGAGYVGLVTAACFAEM--GNQVRCVERDRERVARLRRGEMPIYEPGLESILRDQLDAARLTFTASLAEGLADAEVVFIAVGTPCGEDG-----SADLSHVLAVAEQLGAQLRQACIVVNKSTVPVGTAERVEEIIRLGLARRRKRFRVAVASNPEFLKEGSAVDDFRRPDRVIIG 174          
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: YTCA_BACSU (Putative UDP-glucose 6-dehydrogenase ytcA OS=Bacillus subtilis GN=ytcA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 65/178 (36.52%), Postives = 100/178 (56.18%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN--SKGIKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            +KIC +GAGYVG    A  AL     ++   D  V +I       +P YEPGL   + +C   NL FS++V+  + E  ++F++V TP ++ G     +AD    +S    +++  +S K ++ KSTVP  T E I K L  +  SK + F I+SNPEFL EG A+ D+ +P++ +IG
Sbjct:    1 MKICVVGAGYVGLTLSA--ALASIGHDMICTDKDVKKIGQLKKGVIPFYEPGLSDAILRCG--NLSFSSEVKSSMEECPVIFIAVGTPPRSDG-----SADTKALQSVIGDLSEAIRSYKTIITKSTVPPGTNENIAKQLIASGVSKNL-FNIVSNPEFLREGNALYDMLHPDKTVIG 168          
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: UDG_RICFE (UDP-glucose 6-dehydrogenase OS=Rickettsia felis GN=udg PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.027e-18
Identity = 62/177 (35.03%), Postives = 92/177 (51.98%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKN-LFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            + I  IG+GYVG   ++ I +      V  +D    +I+  N   LPIYE  LD  +KQ    N L F+      +  A+ +F++V TP+K  G      ADL Y   A   +++    D ++V KSTVP  +   I   L   SKG  F + SNPEFL EG+A++D   P+R+++G
Sbjct:    1 MNITFIGSGYVG--LVSGIIMGYLGHNVTCLDNDEVKISKLNKQILPIYEAKLDEYLKQALEANRLKFTNIYNNELQNAEAIFITVGTPSKESG-----EADLKYVYDAIDKVSEHINKDCLIVIKSTVPPDSCSNIIAYL--KSKGFSFNVASNPEFLREGSAVEDFLYPDRIVVG 168          
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: UDG_RICCN (UDP-glucose 6-dehydrogenase OS=Rickettsia conorii GN=udg PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.987e-18
Identity = 64/177 (36.16%), Postives = 92/177 (51.98%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            + I  IG+GYVG   ++ I +      V  +D    +I+  N   LPIYE  LD  +KQ      L F+      +  AD +F++V TP+K  GLG    ADL Y   A   + +    D ++V KSTVP  +   I   L   S+G  F + SNPEFL EG+A++D   P+R++IG
Sbjct:    1 MNITFIGSGYVG--LVSGIIMGYLGHNVTCLDNDEVKISKLNKQILPIYEAKLDEYLKQALESDRLKFTNIYNNELQNADAIFITVGTPSK--GLGE---ADLKYVYDAIDKVFEHINKDCLIVIKSTVPPGSCSNIIAYL--KSRGFSFNVASNPEFLREGSAVEDFLYPDRIVIG 168          
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: UDG_RICBR (UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (strain RML369-C) GN=udg PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.529e-17
Identity = 60/178 (33.71%), Postives = 95/178 (53.37%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTY-WESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            + I  IG+GYVG   ++ + +      V  +D   ++I+  N   LPIYE  LD    Q    + L F++   + +   + VF++V TP+K  G      ADL+Y +E+  ++   ++K D ++V KSTVP  +   I   L    KG  F + SNPEFL EG A++D   P+R++IG
Sbjct:    1 MNITFIGSGYVG--LVSGVMMSYLGHNVTCLDNDEAKISKLNKRILPIYETKLDKYFTQALEHERLKFTSFYNEELKNTEAVFITVGTPSKASG-----EADLSYVYEAIDKISLHINK-DCLIVIKSTVPPNSCNNIINYL--KEKGFSFNVASNPEFLREGNAVEDFLYPDRIVIG 168          
The following BLAST results are available for this feature:
BLAST of CF503899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
UGDH_CAEEL2.953e-5861.88UDP-glucose 6-dehydrogenase OS=Caenorhabditis eleg... [more]
TUAD_BACSU6.639e-2640.66UDP-glucose 6-dehydrogenase tuaD OS=Bacillus subti... [more]
UDG_RHIME5.621e-2539.55UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti ... [more]
Y1054_METJA4.758e-2438.20Uncharacterized protein MJ1054 OS=Methanocaldococc... [more]
YWQF_BACSU4.028e-2338.20UDP-glucose 6-dehydrogenase ywqF OS=Bacillus subti... [more]
UDG_PSEAE6.871e-2336.46UDP-glucose 6-dehydrogenase OS=Pseudomonas aerugin... [more]
YTCA_BACSU2.611e-2236.52Putative UDP-glucose 6-dehydrogenase ytcA OS=Bacil... [more]
UDG_RICFE1.027e-1835.03UDP-glucose 6-dehydrogenase OS=Rickettsia felis GN... [more]
UDG_RICCN2.987e-1836.16UDP-glucose 6-dehydrogenase OS=Rickettsia conorii ... [more]
UDG_RICBR2.529e-1733.71UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-386 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503899 ID=CF503899; Name=CF503899; organism=Citrus sinensis; type=EST; length=590bp
GTTGTTTTGATTTTGAGAAATCGAAGCTCACTGAGGTTATATTGATTAGT
AAAGGAAAATGGTGAAGATCTGCTGCATCGGTGCTGGGTATGTTGGGGGG
CCGACAATGGCAGTCATTGCACTGAAGTGCCCATCCATTGAAGTGGCTGT
TGTTGATATCTCTGTGTCTCGGATCAATGCCTGGAACAGTGACCAGCTCC
CCATCTATGAGCCTGGACTTGATGGTGTGGTAAAGCAGTGCCGAGGGAAG
AACCTGTTCTTCAGCACCGATGTTGAGAAGCATGTCTCTGAGGCTGATAT
TGTCTTTGTTTCGGTCAATACCCCAACTAAAACTCAGGGTCTTGGTGCTG
GCAAAGCTGCAGATCTGACATACTGGGAGAGCGCTGCTCGTGTGATTGCC
GATGTGTCAAAGTCTGACAAAATTGTTGTTGAGAAATCAACAGTTCCTGT
AAAAACTGCTGAGGCAATTGAAAAAATTTTGACCCACAACAGCAAGGGAA
TCAAATTCCAGATCCTTTCAAACCCGGAGTTTCTTGCTGAGGGAACTGCA
ATACAGGATCTTTTTAACCCAAATCGGGTCCTTATCGGTG
back to top