CF503899

Overview
NameCF503899
Unique NameCF503899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: WECC_METVS (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=wecC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.199e-12
Identity = 58/180 (32.22%), Postives = 86/180 (47.78%), Query Frame = 2
Query:   53 RKMVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            +K+ KIC IG GY+G PT +++A      EV  VDIS  R+N   +    I EPGL  ++K     KNL   T  EK    AD   + V TP      G+ K  DL+Y   A   I        ++V +ST+P +T + I  I+       K  +   PE +  G  +++L   +R++ G
Sbjct:    7 QKIKKICVIGLGYIGLPTASMLANH--GYEVIGVDISEKRVNEIKNGDFKIEEPGLLTLLKGAINSKNLNVKTKAEK----ADAFIICVPTPAIGCDDGS-KKCDLSYVLDAVNSILPYIDEGNLIVIESTIPPETTQKIYDIIDK-----KVYVAHCPERVLPGKILKELVENDRIIGG 174          
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: ALGD_AZOVI (GDP-mannose 6-dehydrogenase OS=Azotobacter vinelandii GN=algD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11
Identity = 55/184 (29.89%), Postives = 87/184 (47.28%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            ++I   G GYVG      ++ +    EV  VDIS ++I+  N  + PI EPGL  ++ +  +   L  +T+V + V   ++  + V TP+K  G       +L Y E   R     + D ++   +VV  + +P      +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG
Sbjct:    1 MRISIFGLGYVGAVCAGCLSGR--GHEVVGVDISAAKIDMINQGKSPIVEPGLGELLAEGVKTGRLRGTTNVTEAVLATELSMLCVGTPSKLNG-----DLELDYIEEVCRQMGSALRDKTERHTVVVRSTVLPGTVHNVVIPILEEFSGKKAGVDFGVAVNPEFLRESTAIKDYNFPPMTVIG 177          
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: WECC_SHIFL (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Shigella flexneri GN=wecC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 60/175 (34.29%), Postives = 82/175 (46.86%), Query Frame = 2
Query:   68 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            I  IG GY+G PT A  A +    +V  VDI+   ++  N  ++ I EP L  VVK    G  L  ST       EAD   ++V TP K          D+TY ESAAR IA V K   +V+ +ST PV + E + + L      + F     P+ + E   +   + P RVL G
Sbjct:    6 ISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRASTTPV----EADAWLIAVPTPFK-----GDHEPDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTF-----PQQVGEQADVNIAYCPERVLPG 164          
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: WECC_ECOLI (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escherichia coli (strain K12) GN=wecC PE=3 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 60/175 (34.29%), Postives = 82/175 (46.86%), Query Frame = 2
Query:   68 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            I  IG GY+G PT A  A +    +V  VDI+   ++  N  ++ I EP L  VVK    G  L  ST       EAD   ++V TP K          D+TY ESAAR IA V K   +V+ +ST PV + E + + L      + F     P+ + E   +   + P RVL G
Sbjct:    6 ISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRASTTPV----EADAWLIAVPTPFK-----GDHEPDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTF-----PQQVGEQADVNIAYCPERVLPG 164          
BLAST of CF503899 vs. ExPASy Swiss-Prot
Match: WECC_ECO57 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escherichia coli O157:H7 GN=wecC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 60/175 (34.29%), Postives = 82/175 (46.86%), Query Frame = 2
Query:   68 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPNRVLIG 589
            I  IG GY+G PT A  A +    +V  VDI+   ++  N  ++ I EP L  VVK    G  L  ST       EAD   ++V TP K          D+TY ESAAR IA V K   +V+ +ST PV + E + + L      + F     P+ + E   +   + P RVL G
Sbjct:    6 ISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRASTTPV----EADAWLIAVPTPFK-----GDHEPDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTF-----PQQVGEQADVNIAYCPERVLPG 164          
The following BLAST results are available for this feature:
BLAST of CF503899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
WECC_METVS3.199e-1232.22UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
ALGD_AZOVI2.708e-1129.89GDP-mannose 6-dehydrogenase OS=Azotobacter vinelan... [more]
WECC_SHIFL4.619e-1134.29UDP-N-acetyl-D-mannosamine dehydrogenase OS=Shigel... [more]
WECC_ECOLI4.619e-1134.29UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escher... [more]
WECC_ECO574.619e-1134.29UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escher... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-386 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503899 ID=CF503899; Name=CF503899; organism=Citrus sinensis; type=EST; length=590bp
GTTGTTTTGATTTTGAGAAATCGAAGCTCACTGAGGTTATATTGATTAGT
AAAGGAAAATGGTGAAGATCTGCTGCATCGGTGCTGGGTATGTTGGGGGG
CCGACAATGGCAGTCATTGCACTGAAGTGCCCATCCATTGAAGTGGCTGT
TGTTGATATCTCTGTGTCTCGGATCAATGCCTGGAACAGTGACCAGCTCC
CCATCTATGAGCCTGGACTTGATGGTGTGGTAAAGCAGTGCCGAGGGAAG
AACCTGTTCTTCAGCACCGATGTTGAGAAGCATGTCTCTGAGGCTGATAT
TGTCTTTGTTTCGGTCAATACCCCAACTAAAACTCAGGGTCTTGGTGCTG
GCAAAGCTGCAGATCTGACATACTGGGAGAGCGCTGCTCGTGTGATTGCC
GATGTGTCAAAGTCTGACAAAATTGTTGTTGAGAAATCAACAGTTCCTGT
AAAAACTGCTGAGGCAATTGAAAAAATTTTGACCCACAACAGCAAGGGAA
TCAAATTCCAGATCCTTTCAAACCCGGAGTTTCTTGCTGAGGGAACTGCA
ATACAGGATCTTTTTAACCCAAATCGGGTCCTTATCGGTG
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