CF503908

Overview
NameCF503908
Unique NameCF503908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: GABD_ECOLI (Succinate-semialdehyde dehydrogenase [NADP+] OS=Escherichia coli (strain K12) GN=gabD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 57/184 (30.98%), Postives = 92/184 (50.00%), Query Frame = 2
Query:   77 DGDVFKYYA--DGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            D ++F+  A  +GEW  +N+G+++ + NP        V     +E    ++AA  A   W      +RA +L     ++ EH+  +A  +  E  KP  +A  E+  +   + + AEEG RI G       D+ PG++  K  +  K P+GV  AI P+N+P  +   K  PAL AG ++VLKP
Sbjct:    5 DSNLFRQQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYG-------DTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKP 181          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_PSEAE (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa GN=betB PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19
Identity = 58/178 (32.58%), Postives = 92/178 (51.69%), Query Frame = 2
Query:   92 KYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKP-AKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            K Y  G + +++SG +   +NP       KVQ  S+E+V + +++A   QK+WA     +R+ +L +A  IL+E    +A     +  KP A+    +++   D++ Y A     I GE         P  E T +  T + PLGV   I  +NYPV +A+ K APAL AGN+++ KP
Sbjct:    8 KLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGE-------QIPLRE-TSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKP 177          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_PSEAB (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=betB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19
Identity = 58/178 (32.58%), Postives = 92/178 (51.69%), Query Frame = 2
Query:   92 KYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKP-AKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            K Y  G + +++SG +   +NP       KVQ  S+E+V + +++A   QK+WA     +R+ +L +A  IL+E    +A     +  KP A+    +++   D++ Y A     I GE         P  E T +  T + PLGV   I  +NYPV +A+ K APAL AGN+++ KP
Sbjct:    8 KLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGE-------QIPLRE-TSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKP 177          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_PSEA8 (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain LESB58) GN=betB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19
Identity = 58/178 (32.58%), Postives = 92/178 (51.69%), Query Frame = 2
Query:   92 KYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKP-AKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            K Y  G + +++SG +   +NP       KVQ  S+E+V + +++A   QK+WA     +R+ +L +A  IL+E    +A     +  KP A+    +++   D++ Y A     I GE         P  E T +  T + PLGV   I  +NYPV +A+ K APAL AGN+++ KP
Sbjct:    8 KLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGE-------QIPLRE-TSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKP 177          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_PSEA7 (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=betB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19
Identity = 57/178 (32.02%), Postives = 92/178 (51.69%), Query Frame = 2
Query:   92 KYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKP-AKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            K Y  G + +++SG +   +NP       KVQ  S+E+V + +++A   QK+WA     +R+ +L +A  +L+E    +A     +  KP A+    +++   D++ Y A     I GE         P  E T +  T + PLGV   I  +NYPV +A+ K APAL AGN+++ KP
Sbjct:    8 KLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDLLRERNDELAALETLDTGKPLAETRAVDIVTGADVLEYYAGLVPAIEGE-------QIPLRE-TSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKP 177          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_MARMS (Betaine aldehyde dehydrogenase OS=Marinomonas sp. (strain MWYL1) GN=betB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19
Identity = 56/176 (31.82%), Postives = 94/176 (53.41%), Query Frame = 2
Query:   98 YADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSG-DLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            Y  G +  S SG+    +NP T      V+   Q E++  +E+AK  QK+W+     +R  +L KAA +L+E+   +A   V +  KP ++A+   I++G D++ Y A    +I G+ + L + +F          T + PLG+   I  +NYP+ +A+ K  PAL AGN+++ KP
Sbjct:    7 YIHGRYHASTSGEHFETINPATGEVIATVEHAGQAELDAAVESAKQGQKVWSAMSPVERGRILKKAAELLRENNEELARLEVLDTGKPLQEAIVVDIQTGADVIEYYAGLTDKIQGDYQDLGNGNF--------FYTRREPLGICAGIGAWNYPIQIAMWKSGPALAAGNAMIFKP 174          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_PSEMY (Betaine aldehyde dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.010e-19
Identity = 57/176 (32.39%), Postives = 91/176 (51.70%), Query Frame = 2
Query:   98 YADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDA-VTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            Y  G++  ++SG++   +NP T     KVQ  SQ +V++ + +A   QK+WA     +R+ +L +A  IL+E    +AE    +  KP  +    +++   D++ Y A     I GE   L   SF          T + PLGV   I  +NYP+ +A+ K APAL AGN+++ KP
Sbjct:   10 YIGGQYVAASSGQTFDSINPATGEVLAKVQRASQADVDRAVASAAEGQKVWAAMTAMQRSRILRRAVDILRERNDELAELETLDTGKPLSETRYVDIVTGADVLEYYAGLIPAIEGEQIPLRESSF--------VYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKP 177          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: IOLA1_GEOKA (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Geobacillus kaustophilus GN=iolA1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.840e-19
Identity = 54/179 (30.17%), Postives = 94/179 (52.51%), Query Frame = 2
Query:   86 VFKYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            V K Y  G+W  S+  +++ + NP T     +V   ++E+V++ ++AAK A   W   P+ KRA ++     +L +H   +AE +V+E  K  K+A  E+ R  + V + A     ++GE    +++    +E  +Y      PLGV   I PFN+P+ + +     A++ GN+ VLKP
Sbjct:   10 VLKNYIGGQWVASSGTETLEVPNPATGEVLARVPISTKEDVDQAVQAAKKAFATWKDVPVPKRARIMFSFHHLLNQHHEELAELVVQENGKAYKEAYGEIQRGIECVEFAAGAPTLLMGESLSNIAEEI-DSEMFRY------PLGVVAGITPFNFPMMVPLWMFPLAIVCGNTFVLKP 181          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_STRMK (Betaine aldehyde dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=betB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 59/180 (32.78%), Postives = 89/180 (49.44%), Query Frame = 2
Query:   86 VFKYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVT-EVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            V + Y  G+   + SGK+   VNP T     +VQ  SQ +V + +++A   QK+WA     +R+ +L +A  IL+E    +A     +  K   +  T +++   D+V Y A     I G    L   SF          T + PLGV   I  +NYP+ +A+ K APAL AGN++V KP
Sbjct:    6 VQQLYIHGQRVDATSGKTFKTVNPATGEVIAEVQVASQADVERAVQSASEGQKVWAAMTAMERSRILRRAVEILRERNDELAHLETLDTGKALAETTTVDIVTGADVVEYYAGLATAIEGIQLPLRESSF--------FYTRREPLGVVAGIGAWNYPIQIAMWKSAPALAAGNAMVFKP 177          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_KLEP3 (Betaine aldehyde dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=betB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 52/176 (29.55%), Postives = 93/176 (52.84%), Query Frame = 2
Query:   98 YADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKP-AKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            Y +G +  + SG++   +NP T      VQA  +E+V++ +E+A+  QK+WA     +R+ +L +A  +L++    +A     +  KP ++ A  +++   D++ Y A       G    L     P  + + +  T + PLGV   I  +NYP+ +A+ K APAL AGN+++ KP
Sbjct:   10 YINGGYTSATSGRTFETINPATGEVLATVQAAGREDVDRAVESAQRGQKIWAAMTAMERSRILRRAVDLLRQRNDELARLETLDTGKPLSETAAVDIVTGADVLEYYA-------GLIPALEGSQIPLRD-SSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKP 177          
The following BLAST results are available for this feature:
BLAST of CF503908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
GABD_ECOLI9.545e-2130.98Succinate-semialdehyde dehydrogenase [NADP+] OS=Es... [more]
BETB_PSEAE3.070e-1932.58Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
BETB_PSEAB3.070e-1932.58Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
BETB_PSEA83.070e-1932.58Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
BETB_PSEA73.070e-1932.02Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
BETB_MARMS3.070e-1931.82Betaine aldehyde dehydrogenase OS=Marinomonas sp. ... [more]
BETB_PSEMY4.010e-1932.39Betaine aldehyde dehydrogenase OS=Pseudomonas mend... [more]
IOLA1_GEOKA6.840e-1930.17Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_STRMK1.167e-1832.78Betaine aldehyde dehydrogenase OS=Stenotrophomonas... [more]
BETB_KLEP31.167e-1829.55Betaine aldehyde dehydrogenase OS=Klebsiella pneum... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-395 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503908 ID=CF503908; Name=CF503908; organism=Citrus sinensis; type=EST; length=629bp
CTTCTTCAACTAGTTTACTCTGTTGGGTGGTTCATTGTGAGAAATGGCTG
GCAATGGTATTTTTGCTGAGATTTTAGATGGGGACGTGTTCAAGTACTAT
GCTGATGGCGAATGGAAGAAGTCTAATTCTGGCAAAAGCGTTCCCATTGT
CAACCCCACTACTCGCAGAACTCACTACAAAGTTCAGGCTTGTTCACAAG
AGGAGGTGAACAAGGTAATGGAAGCAGCAAAAGCTGCACAAAAATTATGG
GCAAAGACTCCGCTTTGGAAGAGAGCTGAGCTCCTGCACAAGGCTGCTGC
AATTCTCAAAGAGCACAAGGCCCCCATTGCTGAGTGTTTGGTTAAAGAAA
TTGCAAAGCCAGCTAAAGATGCTGTCACTGAGGTTATAAGGTCTGGAGAT
TTGGTCTCTTATTGTGCCGAAGAGGGTGTTCGGATTCTCGGAGAAGGGAA
GTTTTTGGTGTCTGATAGCTTCCCCGGAAATGAGAGGACTAAGTATTGTC
TCACTTCAAAGATTCCACTTGGTGTGGGTTTGGCCATTCCACCGTTCAAC
TATCCAGTCAATCTTGCCGTTTCCAAAATTGCTCCTGCACTGATTGCTGG
AAATTCCCTTGTGCTTAAGCCTCCTACTC
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