CF503908

Overview
NameCF503908
Unique NameCF503908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_ECOL6 (Betaine aldehyde dehydrogenase OS=Escherichia coli O6 GN=betB PE=3 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 9.877e-18
Identity = 53/176 (30.11%), Postives = 90/176 (51.14%), Query Frame = 2
Query:   98 YADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVT-EVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            Y  G +  + SG++   +NP        VQA  +E+V++ +++A+  QK+WA     +R+ +L +A  IL+E    +A+    +  K   +  T +++   D++ Y A       G    L     P  E T +  T + PLGV   I  +NYP+ +A+ K APAL AGN+++ KP
Sbjct:   10 YIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYA-------GLIPALEGSQIPLRE-TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKP 177          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_ECOHS (Betaine aldehyde dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.877e-18
Identity = 53/176 (30.11%), Postives = 90/176 (51.14%), Query Frame = 2
Query:   98 YADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVT-EVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            Y  G +  + SG++   +NP        VQA  +E+V++ +++A+  QK+WA     +R+ +L +A  IL+E    +A+    +  K   +  T +++   D++ Y A       G    L     P  E T +  T + PLGV   I  +NYP+ +A+ K APAL AGN+++ KP
Sbjct:   10 YIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYA-------GLIPALEGSQIPLRE-TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKP 177          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_ECO5E (Betaine aldehyde dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=betB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.877e-18
Identity = 53/176 (30.11%), Postives = 90/176 (51.14%), Query Frame = 2
Query:   98 YADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVT-EVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            Y  G +  + SG++   +NP        VQA  +E+V++ +++A+  QK+WA     +R+ +L +A  IL+E    +A+    +  K   +  T +++   D++ Y A       G    L     P  E T +  T + PLGV   I  +NYP+ +A+ K APAL AGN+++ KP
Sbjct:   10 YIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYA-------GLIPSLEGSQIPLRE-TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKP 177          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_ECO57 (Betaine aldehyde dehydrogenase OS=Escherichia coli O157:H7 GN=betB PE=3 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 9.877e-18
Identity = 53/176 (30.11%), Postives = 90/176 (51.14%), Query Frame = 2
Query:   98 YADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVT-EVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            Y  G +  + SG++   +NP        VQA  +E+V++ +++A+  QK+WA     +R+ +L +A  IL+E    +A+    +  K   +  T +++   D++ Y A       G    L     P  E T +  T + PLGV   I  +NYP+ +A+ K APAL AGN+++ KP
Sbjct:   10 YIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYA-------GLIPSLEGSQIPLRE-TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKP 177          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_ECO55 (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=betB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.877e-18
Identity = 53/176 (30.11%), Postives = 90/176 (51.14%), Query Frame = 2
Query:   98 YADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVT-EVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            Y  G +  + SG++   +NP        VQA  +E+V++ +++A+  QK+WA     +R+ +L +A  IL+E    +A+    +  K   +  T +++   D++ Y A       G    L     P  E T +  T + PLGV   I  +NYP+ +A+ K APAL AGN+++ KP
Sbjct:   10 YIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYA-------GLIPALEGSQIPLRE-TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKP 177          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_ECO45 (Betaine aldehyde dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.877e-18
Identity = 53/176 (30.11%), Postives = 90/176 (51.14%), Query Frame = 2
Query:   98 YADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVT-EVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            Y  G +  + SG++   +NP        VQA  +E+V++ +++A+  QK+WA     +R+ +L +A  IL+E    +A+    +  K   +  T +++   D++ Y A       G    L     P  E T +  T + PLGV   I  +NYP+ +A+ K APAL AGN+++ KP
Sbjct:   10 YIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYA-------GLIPALEGSQIPLRE-TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKP 177          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_ECO24 (Betaine aldehyde dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=betB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.877e-18
Identity = 53/176 (30.11%), Postives = 90/176 (51.14%), Query Frame = 2
Query:   98 YADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVT-EVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            Y  G +  + SG++   +NP        VQA  +E+V++ +++A+  QK+WA     +R+ +L +A  IL+E    +A+    +  K   +  T +++   D++ Y A       G    L     P  E T +  T + PLGV   I  +NYP+ +A+ K APAL AGN+++ KP
Sbjct:   10 YIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYA-------GLIPSLEGSQIPLRE-TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKP 177          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: SSDH_ARATH (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=ALDH5F1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.290e-17
Identity = 51/172 (29.65%), Postives = 85/172 (49.42%), Query Frame = 2
Query:  107 GEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            G+W  S   K++ + NP T      V     +E N  + ++  A   W++    +R+++L +   +L  HK  + + +  E  KP K+A+ EV      + Y AEE  R+ G       D  P N   +  L  K P+GV  AI P+N+P+ +   K+ PAL +G ++V+KP
Sbjct:   59 GKWLDSYDNKTIKVNNPATGEIIADVACMGTKETNDAIASSYEAFTSWSRLTAGERSKVLRRWYDLLIAHKEELGQLITLEQGKPLKEAIGEVAYGASFIEYYAEEAKRVYG-------DIIPPNLSDRRLLVLKQPVGVVGAITPWNFPLAMITRKVGPALASGCTVVVKP 223          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: IOLA2_GEOTN (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=iolA2 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.290e-17
Identity = 62/177 (35.03%), Postives = 88/177 (49.72%), Query Frame = 2
Query:   92 KYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            K +  G+W  S SGK   + NP T     KV   S+EE++  + AAK A + W K P+ +RA +L +   +L EH   +A  +  E  K  +DA  EV R  + V + A  G+  L  G+ L  D   G E   Y    + PLGV   I PFN+P+ +       A+  GN+ VLKP
Sbjct:    8 KNFIGGQWVASTSGKEEIVPNPATGEVLAKVPISSREELDAAVAAAKEAFREWRKVPVPRRARILFRYQQLLVEHWEELARLVTLENGKVYEDAYGEVQRGIECVEFAA--GIPTLMMGQQL-PDIATGIESGMY----RYPLGVVAGITPFNFPMMVPCWMFPLAIACGNTFVLKP 177          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: BETB_SERP5 (Betaine aldehyde dehydrogenase OS=Serratia proteamaculans (strain 568) GN=betB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.290e-17
Identity = 54/178 (30.34%), Postives = 90/178 (50.56%), Query Frame = 2
Query:   92 KYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKP-AKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            K Y +G +  S  GK+   VNP       ++Q+ S E+VN+ + +A + QK+WA      R+ +L +A  IL+E    +A     +  K  ++    +++   D++ Y A     I G+         P  + T +  T + PLGV   I  +NYP+ +A+ K APAL AGN+++ KP
Sbjct:    8 KLYINGAYVDSTDGKTFNAVNPANGEVLAEIQSASAEDVNRAVASAASGQKVWAAMTAMARSRILRRAVDILRERNDELAALETLDTGKAMSETTAVDIVTGADVLEYYAGLIPSIEGQ-------QIPLRD-TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKP 177          
The following BLAST results are available for this feature:
BLAST of CF503908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
BETB_ECOL69.877e-1830.11Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOHS9.877e-1830.11Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO5E9.877e-1830.11Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO579.877e-1830.11Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO559.877e-1830.11Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO459.877e-1830.11Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO249.877e-1830.11Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
SSDH_ARATH1.290e-1729.65Succinate-semialdehyde dehydrogenase, mitochondria... [more]
IOLA2_GEOTN1.290e-1735.03Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_SERP51.290e-1730.34Betaine aldehyde dehydrogenase OS=Serratia proteam... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-395 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503908 ID=CF503908; Name=CF503908; organism=Citrus sinensis; type=EST; length=629bp
CTTCTTCAACTAGTTTACTCTGTTGGGTGGTTCATTGTGAGAAATGGCTG
GCAATGGTATTTTTGCTGAGATTTTAGATGGGGACGTGTTCAAGTACTAT
GCTGATGGCGAATGGAAGAAGTCTAATTCTGGCAAAAGCGTTCCCATTGT
CAACCCCACTACTCGCAGAACTCACTACAAAGTTCAGGCTTGTTCACAAG
AGGAGGTGAACAAGGTAATGGAAGCAGCAAAAGCTGCACAAAAATTATGG
GCAAAGACTCCGCTTTGGAAGAGAGCTGAGCTCCTGCACAAGGCTGCTGC
AATTCTCAAAGAGCACAAGGCCCCCATTGCTGAGTGTTTGGTTAAAGAAA
TTGCAAAGCCAGCTAAAGATGCTGTCACTGAGGTTATAAGGTCTGGAGAT
TTGGTCTCTTATTGTGCCGAAGAGGGTGTTCGGATTCTCGGAGAAGGGAA
GTTTTTGGTGTCTGATAGCTTCCCCGGAAATGAGAGGACTAAGTATTGTC
TCACTTCAAAGATTCCACTTGGTGTGGGTTTGGCCATTCCACCGTTCAAC
TATCCAGTCAATCTTGCCGTTTCCAAAATTGCTCCTGCACTGATTGCTGG
AAATTCCCTTGTGCTTAAGCCTCCTACTC
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