CF503908

Overview
NameCF503908
Unique NameCF503908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: ASTD_BURM1 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=astD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 49/175 (28.00%), Postives = 79/175 (45.14%), Query Frame = 2
Query:   98 YADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            + DG W  + SG +    NP T    ++  + S  +V++ + +A+ A   W+      R  +  + AA+L E K  +A  + +E  KP  +A TEV      V    +      GE +  ++D           +    P GV     P+N+P +L    I PALIAGN++V KP
Sbjct:    5 FIDGAWV-AGSGPAFASRNPGTDDIAWQGASASAADVDRAIMSARRAFADWSALDFESRCAIAKRFAALLNERKEALAAAIGRETGKPLWEARTEVAAMAAKVGISIQAYQERTGEKRQDMADG--------VAVLRHRPHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKP 170          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: ASTD_SHEWM (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=astD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 48/175 (27.43%), Postives = 80/175 (45.71%), Query Frame = 2
Query:   98 YADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            + +G+W  +  G  V   NP      +  +  + E+VN  +EAA+  Q  W       R  ++      L+EHKA +AE + +E  KP  +  TE   +G ++    + G+ +    K   + S   +      +    P GV     P+N+P +L    I PAL+AGN++V KP
Sbjct:    4 FINGQWV-AGLGHEVTSKNPANSEVIWSSKTATAEQVNTAVEAAREVQFDWFMLGFEGRLAIVEAYKTQLEEHKAEMAEVIAQETGKPQWETATE---AGAMI---GKIGLSVAAYNK--RTGSSENDTPAGRAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKP 169          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: ASTD_ECOSE (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain SE11) GN=astD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 46/175 (26.29%), Postives = 83/175 (47.43%), Query Frame = 2
Query:   98 YADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            + +G+W  +  G S    NP +    ++       +V +   AA+AA   WA+  L +R  ++ + A +L+ +K  +   + +E  KP  +A TEV    + ++   +      GE +  + D   G    ++C     P GV     P+N+P +L    I PAL+AGN+++ KP
Sbjct:    4 WINGDWI-TGQGASRVKRNPVSGEVLWQGNDADAAQVEQACRAARAAFPRWARLSLAERQVVVERFAGLLERNKGELTAIIARETGKPRWEAATEVTAMINKIAISIKAYHVRTGEQRSEMPD---GAASLRHC-----PHGVLAVFGPYNFPGHLPNGHIVPALLAGNTIIFKP 169          
The following BLAST results are available for this feature:
BLAST of CF503908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
ASTD_BURM16.856e-1128.00N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SHEWM8.954e-1127.43N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECOSE8.954e-1126.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-395 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503908 ID=CF503908; Name=CF503908; organism=Citrus sinensis; type=EST; length=629bp
CTTCTTCAACTAGTTTACTCTGTTGGGTGGTTCATTGTGAGAAATGGCTG
GCAATGGTATTTTTGCTGAGATTTTAGATGGGGACGTGTTCAAGTACTAT
GCTGATGGCGAATGGAAGAAGTCTAATTCTGGCAAAAGCGTTCCCATTGT
CAACCCCACTACTCGCAGAACTCACTACAAAGTTCAGGCTTGTTCACAAG
AGGAGGTGAACAAGGTAATGGAAGCAGCAAAAGCTGCACAAAAATTATGG
GCAAAGACTCCGCTTTGGAAGAGAGCTGAGCTCCTGCACAAGGCTGCTGC
AATTCTCAAAGAGCACAAGGCCCCCATTGCTGAGTGTTTGGTTAAAGAAA
TTGCAAAGCCAGCTAAAGATGCTGTCACTGAGGTTATAAGGTCTGGAGAT
TTGGTCTCTTATTGTGCCGAAGAGGGTGTTCGGATTCTCGGAGAAGGGAA
GTTTTTGGTGTCTGATAGCTTCCCCGGAAATGAGAGGACTAAGTATTGTC
TCACTTCAAAGATTCCACTTGGTGTGGGTTTGGCCATTCCACCGTTCAAC
TATCCAGTCAATCTTGCCGTTTCCAAAATTGCTCCTGCACTGATTGCTGG
AAATTCCCTTGTGCTTAAGCCTCCTACTC
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