CF503909

Overview
NameCF503909
Unique NameCF503909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 43/128 (33.59%), Postives = 73/128 (57.03%), Query Frame = 1
Query:    1 KGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD--SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 378
            + +SQII QYY F+R GFEGY+ I E     A  L + +EK+G FEI++    +P+V + +K+      T++++++ L   GW VPAY +PA+  +  + R V R D   ++ E   +   + +  +E
Sbjct:  321 RSASQIIGQYYNFLRYGFEGYREIHEKTKKTAIYLAKTVEKSGYFEIINDGANLPIVCYKMKEGLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADAIHNLE 448          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    7 SSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 387
            + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  321 AGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    7 SSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 387
            + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  321 AGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    7 SSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 387
            + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  321 AGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    7 SSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 387
            + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  321 AGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    7 SSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 387
            + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  321 AGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKQGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    7 SSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 387
            + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  321 AGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    7 SSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 387
            + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  321 AGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.084e-17
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    7 SSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 387
            + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LK+     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  321 AGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKEGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 42/130 (32.31%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   13 QIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG-VPLVAFS----LKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 387
            QIIAQYY F+R G  GY  I + C      + + L+K G F+++    G +P V ++    L       ++++SE LR  GW V +Y++P++  +V V RVV+R  FSR L    +  ++  ++  +  P
Sbjct:  319 QIIAQYYNFLRHGRNGYTLIQDACAQQGIFIGKELKKMGIFDLIYDGTGALPGVCWTISKNLPSEPLFNLYDLSEKLRSRGWQVASYSLPSSMNDVVVSRVVIRHGFSRDLSSLFVKDVQNAIEYFQKHP 448          
The following BLAST results are available for this feature:
BLAST of CF503909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
DCEC_LISMO2.091e-1733.59Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_SHIFL2.091e-1735.61Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI2.091e-1735.61Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECOL62.091e-1735.61Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEB_ECO572.091e-1735.61Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL2.091e-1735.61Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_ECOLI2.091e-1735.61Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL62.091e-1735.61Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECO576.084e-1734.85Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
GADB_DICDI1.832e-1332.31Glutamate decarboxylase B OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-396 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503909 ID=CF503909; Name=CF503909; organism=Citrus sinensis; type=EST; length=540bp
AAAGGCTCCAGTCAAATAATTGCTCAATATTATCAGTTTATACGGCTTGG
CTTTGAGGGTTACAAGAACATTATGGAAAATTGCATGGGGAATGCTAGAG
CGCTAAGAGAAGGATTAGAGAAAACAGGGCGCTTTGAAATTCTCTCCAAG
GATGTTGGCGTACCCTTAGTAGCCTTTTCTTTGAAGGACAGCAGCGCACA
CACCGTGTTTGAGATATCCGAGGGTTTGAGAAAGTTTGGGTGGATAGTTC
CGGCCTATACAATGCCTGCTAATGCTGAAAATGTGGCGGTTCTTCGGGTG
GTTGTCAGGGAGGATTTCAGCCGTAGCTTGGTGGAAAGACTCATCTCACA
CATCGAGGAAGTTTTGAAGGAAATTGAATCGCTTCCAAGTCGTGTATCCA
CAAAAACTGCCCATGTCATACCCATGGTCAACGAAACTCAGGGTGATAAG
CCACTTAAGAAGAGTGTGAGGGAGACTCAGGAGGAAGTCACCAGGCACTG
GAAGAGGTTCGTGAAAGGCCGGAGAGCTGGAGCATGCTGA
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