CF503909

Overview
NameCF503909
Unique NameCF503909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF503909 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 37/128 (28.91%), Postives = 68/128 (53.12%), Query Frame = 1 
Query:   13 QIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG-VPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 387
            QI+ QYY F+R G  GY  + + C+ +   + + ++K G F+I+    G +P   + LK  +     +F++S+ +R  GW + +YT+P N  ++ V RV++R  FS  +   LI      ++  +  P
Sbjct:  321 QIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLP-NLPDIVVQRVLIRHGFSHDMAMLLIEDFNRSIEYFDKHP 447
The following BLAST results are available for this feature:
BLAST of CF503909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GADA_DICDI4.989e-1128.91Glutamate decarboxylase A OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-396 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503909 ID=CF503909; Name=CF503909; organism=Citrus sinensis; type=EST; length=540bp
AAAGGCTCCAGTCAAATAATTGCTCAATATTATCAGTTTATACGGCTTGG
CTTTGAGGGTTACAAGAACATTATGGAAAATTGCATGGGGAATGCTAGAG
CGCTAAGAGAAGGATTAGAGAAAACAGGGCGCTTTGAAATTCTCTCCAAG
GATGTTGGCGTACCCTTAGTAGCCTTTTCTTTGAAGGACAGCAGCGCACA
CACCGTGTTTGAGATATCCGAGGGTTTGAGAAAGTTTGGGTGGATAGTTC
CGGCCTATACAATGCCTGCTAATGCTGAAAATGTGGCGGTTCTTCGGGTG
GTTGTCAGGGAGGATTTCAGCCGTAGCTTGGTGGAAAGACTCATCTCACA
CATCGAGGAAGTTTTGAAGGAAATTGAATCGCTTCCAAGTCGTGTATCCA
CAAAAACTGCCCATGTCATACCCATGGTCAACGAAACTCAGGGTGATAAG
CCACTTAAGAAGAGTGTGAGGGAGACTCAGGAGGAAGTCACCAGGCACTG
GAAGAGGTTCGTGAAAGGCCGGAGAGCTGGAGCATGCTGA
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