CF503913

Overview
NameCF503913
Unique NameCF503913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9350 contig Csv1_Contig9350:5..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.669e-15
Identity = 56/183 (30.60%), Postives = 83/183 (45.36%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  +A+A++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH+D   A +SR     +  +  S+
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSRTRGEHIAEYAESL 155          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.669e-15
Identity = 58/171 (33.92%), Postives = 83/171 (48.54%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRM 604
            R++V  +RRREGKT+YR R++L+   K        R VVR TN+ +IAQIV     GD V+    +  L  +G +  L N  AAY TG+L+A++ L+            +  GE              A+LD+GL   T G+RVF            +PHSD+     SR+
Sbjct:    8 RYKVPLRRRREGKTNYRKRLKLLLSRKP-------RLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDEVLPDDSRI 145          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.098e-15
Identity = 56/162 (34.57%), Postives = 76/162 (46.91%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD 577
            R+ V ++RRREG+TDY  R +L+  D         R VVR TN+ II Q+V+A + GD  L +A + EL +YG      N  AAY TGLL A +  K               G+D             A+LD+GL + T G RVF            IP+ +
Sbjct:    6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGE 134          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.098e-15
Identity = 58/183 (31.69%), Postives = 81/183 (44.26%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640
            R++VK++RRREGKTDY  R+ L+   K        R VVR TN+ II Q +     GD V+A A++ EL +YG   G  N  AAY TG L A R  K         G  E                  A+LD+G   +T G+R++            +PHS +      R+    +  F   +
Sbjct:    6 RYKVKFRRRREGKTDYMKRLALLKSRKP-------RVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMRAKK--------AGVTE------------------AILDIGRFPSTKGSRLYAALKGVLDAGIDVPHSPEILPDEDRIRGEHIASFAEKL 155          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METS3 (50S ribosomal protein L18P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.358e-14
Identity = 58/198 (29.29%), Postives = 91/198 (45.96%), Query Frame = 2
Query:   95 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASISMVDML-LLHEYIDGG 685
            ++V ++RRREGKTDY AR++L++ DK+       R VVR +N     Q++     GD  LA+A + +L  YG   G +N +A Y TG L A+R L              A G D             A+LD+GL     G++VF            IP+ +      SR+    +  +  S+   ++  L  +Y++ G
Sbjct:    7 YKVPFRRRREGKTDYAARMKLVDYDKS-------RLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSAVYLTGYLCAKRAL--------------AKGVD------------SAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGEAVLPDESRINGEHVANYAESLDDDEIAKLFSKYLERG 171          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14
Identity = 56/170 (32.94%), Postives = 77/170 (45.29%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSR 601
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  LA+A++ +L  YG E    N  +AY TGLL   R           E  VE                  A+LD+GL   T G++VF            IPH+D   A + R
Sbjct:    6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQR 142          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 56/162 (34.57%), Postives = 75/162 (46.30%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD 577
            R+ V ++RR EGKTDY  R+ L++       TP  R VVR TN+ II Q+V   + GDS L AAY+ EL  YG E    +  AAY TG+L A                V+A    Y            A+LD+GL +   G RVF            +P+ +
Sbjct:    6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.511e-14
Identity = 51/162 (31.48%), Postives = 75/162 (46.30%), Query Frame = 2
Query:   95 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDK 580
            ++VK++RRRE KTDYR R++L+   K        R V R T    IAQIV  +  GD  + +A++ EL + G +    N  +AY TG LL ++ L         +G  E                  A+LD+GL + T GN +F            IPH ++
Sbjct:    7 YRVKFRRRREAKTDYRKRLKLLLSRKP-------RLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKLGYKGHTGNLPSAYLTGYLLGKKALA--------KGYTE------------------AVLDIGLHRATKGNAIFAILKGALDAGMEIPHGEE 135          

HSP 2 Score: 26.9498 bits (58), Expect = 3.511e-14
Identity = 9/24 (37.50%), Postives = 16/24 (66.67%), Query Frame = 3
Query:  663 YMSTLMEDEPEKYQSHFTEYIKKG 734
            Y   L E + E+Y+  F++Y++KG
Sbjct:  151 YAEMLKEQDEERYKKQFSKYLEKG 174          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_HYPBU (50S ribosomal protein L18P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 63/188 (33.51%), Postives = 87/188 (46.28%), Query Frame = 2
Query:   80 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640
            A+  R++V  +RRREGKT+Y  R  ++   K        RFVVR TN+ I  Q++ A   GD  +AAA++ EL  +YG   G  N  AAY TGLL A R LK               G  Y            A+LD+GL + T G RVF            IPHS++      R+    + ++ A +
Sbjct:    2 AHGPRYKVPRRRRREGKTNYYKRYVMVLSGKP-------RFVVRRTNQYIWVQVIIAKPQGDVTVAAAHSRELVKKYGWLGGTKNTPAAYLTGLLAALRALK--------------AGITY------------AVLDIGLHRPTRGARVFAALKGALDAGLEIPHSEEVLPEEYRIRGEHIAKYAAML 156          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 56/183 (30.60%), Postives = 87/183 (47.54%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A   R+  + +  +  S+
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIADEERLNGTHVKNYAESL 155          
The following BLAST results are available for this feature:
BLAST of CF503913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL18_HALS34.669e-1530.6050S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_ARCFU4.669e-1533.9250S ribosomal protein L18P OS=Archaeoglobus fulgid... [more]
RL18_METB66.098e-1534.5750S ribosomal protein L18P OS=Methanoregula boonei... [more]
RL18_KORCO6.098e-1531.6950S ribosomal protein L18P OS=Korarchaeum cryptofi... [more]
RL18_METS31.358e-1429.2950S ribosomal protein L18P OS=Methanobrevibacter s... [more]
RL18_HALMA1.774e-1432.9450S ribosomal protein L18P OS=Haloarcula marismort... [more]
RL18_METMJ2.317e-1434.5750S ribosomal protein L18P OS=Methanoculleus maris... [more]
RL18_METJA3.511e-1431.4850S ribosomal protein L18P OS=Methanocaldococcus j... [more]
RL18_HYPBU5.162e-1433.5150S ribosomal protein L18P OS=Hyperthermus butylic... [more]
RL18_METM76.742e-1430.6050S ribosomal protein L18P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-401 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503913 ID=CF503913; Name=CF503913; organism=Citrus sinensis; type=EST; length=735bp
GCCGTCTCTCCTTCCCTCTCCTTTCTCTTACAACTCGAAAGTTCGAGCAA
TGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGTTCCAG
GTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCTAGAAT
TCGCTTGATTAATCAGGACAAGAATAAGTACAACACACCCAAATACCGAT
TTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGATAGTGTCAGCC
AACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAGCTTCC
TCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCA
CTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGGATGAT
GAGTATGAGGGCAATGTTGAGGCTACCGGAGAGGATTACTCTGTCGAACC
AGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGGCTCATCA
AAACAACAACTGGAAACCGTGTCTTTGGTGCTCTGAAGGGAGCATTAGAT
GGTGGATTGGACATTCCTCATAGTGACAAGAGGTTTGCTGGTTTTTCAAG
GATGGCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTATATCTATGGTGG
ACATGTTGCTGCTACATGAGTACATTGATGGAGGATGAGCCAGAGAAGTA
TCAATCTCACTTCACCGAGTACATCAAGAAAGGAA
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