CF503913

Overview
NameCF503913
Unique NameCF503913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9350 contig Csv1_Contig9350:5..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 53/145 (36.55%), Postives = 71/145 (48.97%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVF 526
            R+ V+++RRREG+TDY  R RLI   +N       R VVR TN+ II Q+++A + GD  L    + EL  +G +  L N  AAY TG+L A R  K       YEG +                      D+GL   +TG RVF
Sbjct:    6 RYFVQFRRRREGRTDYYQRQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQKA-----GYEGGI---------------------ADIGLQVASTGARVF 117          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_NATPD (50S ribosomal protein L18P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 52/183 (28.42%), Postives = 79/183 (43.17%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640
            R+ V  +RRRE +T+Y  R+RL+   K        R V R +N    AQ+V     GD  +A+A + +L  +G E    N  AAY TGLL  +R ++               G D             A+LD+GL   T GN+VF            +PH++  FA + R   + +  +   +
Sbjct:    6 RYTVPMRRRREARTNYHQRLRLLKSGKP-------RLVARKSNNQTKAQLVVTGPQGDETVASATSADLEAFGWEAPTGNLPAAYLTGLLAGKRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFAVQEGVIDAGLEVPHNEDVFADWQRTRGAHIAEYAEQL 155          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_HALWD (50S ribosomal protein L18P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 52/170 (30.59%), Postives = 74/170 (43.53%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSR 601
            R++V  +RRRE +TDY  R+RL+   K        R V R +N+ + AQ+++    GD    AA +  L  YG E    N  +AY TG L   R ++               G D             A+LD+GL   T GN+VF            IPH++   A +SR
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNRHVRAQLITPGPDGDETHVAASSEHLSEYGWEAPTGNLPSAYLTGYLAGMRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFVVQEGAIDAGVSIPHNESVLADWSR 142          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_HALLT (50S ribosomal protein L18P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 54/170 (31.76%), Postives = 73/170 (42.94%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSR 601
            R++V  +RRRE +TDY  R+RL+   K        R V R +N  + AQ+V+    GD   AAA + EL  YG +    N  +AY TG L   R +                G D             A+LD+GL   T GN+ F            IPH+D   A +SR
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNAHVRAQLVTPGSDGDETHAAASSEELGEYGWDAPTGNLPSAYLTGYLAGARAVD--------------AGLD------------EAVLDIGLNTATPGNKTFAVQEGAIDAGLEIPHNDDVLADWSR 142          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 55/143 (38.46%), Postives = 72/143 (50.35%), Query Frame = 2
Query:   80 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRAL---LDVGL 496
            A+   ++VKY+RRREGKT+Y  R   +  +         R VVR TNK IIAQI   N  GD ++ AA++ EL  ++G +  L N  AAY TG LL  R LK         G  EA  +     P    R F A+   +D GL
Sbjct:    2 AHGPNYRVKYRRRREGKTNYYKRYTYVINNTT-------RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKEAVADIGLFVPVKGSRIFTAIKGAIDAGL 129          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METBU (50S ribosomal protein L18P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 50/171 (29.24%), Postives = 80/171 (46.78%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRM 604
            R++V ++RRREG+TDY  R+RL+   ++       R VVR + + +  Q+V+ +  GD  L++A + EL +YG E    N  AAY TGLL   + L      + YE  V                     LD+G+  ++ G+RV+            +PH+   F    R+
Sbjct:    6 RYKVAFRRRREGRTDYHQRLRLLLSRED-------RVVVRKSARHMQIQLVAPDANGDVTLSSAISKELAKYGYEGSTGNTTAAYLTGLLFGYKTLA-----EGYESGV---------------------LDIGIQASSAGSRVYAALKGVVDSGLDVPHNSSVFPSDERI 143          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_CALMQ (50S ribosomal protein L18P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 56/186 (30.11%), Postives = 89/186 (47.85%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTD-YRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVL-KMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640
            R++VK++RRREGKTD Y+ RI +I        + K R VVRF+N+ ++AQ++ +   GD  +A A + EL  ++G   G  N  AAY  GLL+  R L K +++                           A+LDVGL + T G R+F            +PH ++      R+    + ++ A +
Sbjct:    6 RYKVKFRRRREGKTDYYKRRIMVI--------SGKPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNTPAAYLVGLLIGYRALSKGIKL---------------------------AVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDEEVQPSEDRLNGEHIAQYAADL 156          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 4.080e-12
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 1
Query:  598 KDGKQLDAEVHRKYIYGGHVAA 663
            KD KQLDAEVHRKYIYGGHVAA
Sbjct:    3 KDSKQLDAEVHRKYIYGGHVAA 24          

HSP 2 Score: 43.5134 bits (101), Expect = 4.080e-12
Identity = 18/22 (81.82%), Postives = 20/22 (90.91%), Query Frame = 3
Query:  663 YMSTLMEDEPEKYQSHFTEYIK 728
            YM+ LMEDEPEKYQSHF+ YIK
Sbjct:   25 YMNILMEDEPEKYQSHFSSYIK 46          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.832e-12
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLK 382
            R++V  +RRREGKT+Y  R +++            RFVVR T K II QIV+A   GD  +AAA++ EL  +YG   GL N  AAY TGLL A R LK
Sbjct:    6 RYKVPKRRRREGKTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK 96          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 54/183 (29.51%), Postives = 78/183 (42.62%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640
            R++V ++RRREG T+YR R RLI   K        R VVR TNK IIAQ+V A   GD  +       L ++G      N +AAY  GL+              Y+  +    E              A+LD+GL +   G+RVF            IPH ++      R++   +  + A +
Sbjct:    6 RYKVPFRRRREGLTNYRKRRRLILSRKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLVAG------------YKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEVLPEDDRVSGKHVAEYAAKL 155          
The following BLAST results are available for this feature:
BLAST of CF503913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL18_METLZ9.735e-1336.5550S ribosomal protein L18P OS=Methanocorpusculum l... [more]
RL18_NATPD1.271e-1228.4250S ribosomal protein L18P OS=Natronomonas pharaon... [more]
RL18_HALWD1.661e-1230.5950S ribosomal protein L18P OS=Haloquadratum walsby... [more]
RL18_HALLT1.661e-1231.7650S ribosomal protein L18P OS=Halorubrum lacusprof... [more]
RL18_SULTO2.833e-1238.4650S ribosomal protein L18P OS=Sulfolobus tokodaii ... [more]
RL18_METBU2.833e-1229.2450S ribosomal protein L18P OS=Methanococcoides bur... [more]
RL18_CALMQ2.833e-1230.1150S ribosomal protein L18P OS=Caldivirga maquiling... [more]
RL5_SOLME4.080e-1295.4560S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL18_STAMF4.832e-1247.9650S ribosomal protein L18P OS=Staphylothermus mari... [more]
RL18_THENV8.241e-1229.5150S ribosomal protein L18P OS=Thermoproteus neutro... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-401 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503913 ID=CF503913; Name=CF503913; organism=Citrus sinensis; type=EST; length=735bp
GCCGTCTCTCCTTCCCTCTCCTTTCTCTTACAACTCGAAAGTTCGAGCAA
TGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGTTCCAG
GTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCTAGAAT
TCGCTTGATTAATCAGGACAAGAATAAGTACAACACACCCAAATACCGAT
TTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGATAGTGTCAGCC
AACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAGCTTCC
TCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCA
CTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGGATGAT
GAGTATGAGGGCAATGTTGAGGCTACCGGAGAGGATTACTCTGTCGAACC
AGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGGCTCATCA
AAACAACAACTGGAAACCGTGTCTTTGGTGCTCTGAAGGGAGCATTAGAT
GGTGGATTGGACATTCCTCATAGTGACAAGAGGTTTGCTGGTTTTTCAAG
GATGGCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTATATCTATGGTGG
ACATGTTGCTGCTACATGAGTACATTGATGGAGGATGAGCCAGAGAAGTA
TCAATCTCACTTCACCGAGTACATCAAGAAAGGAA
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