CF503915

Overview
NameCF503915
Unique NameCF503915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.073e-33
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 3
Query:  102 ASDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTV 371
            ASDL PV GS ++YLGRPW++YSRTV M++ +   IDP GW EW G+FALKTL+Y E+ N GPGA TS RV WPG+ V+ +  EA KFTV
Sbjct:  402 ASDLRPVLGSTKTYLGRPWRQYSRTVFMKTSLDSLIDPRGWLEWDGNFALKTLFYAEFQNTGPGASTSGRVTWPGFRVLGSASEASKFTV 491          

HSP 2 Score: 38.1206 bits (87), Expect = 1.073e-33
Identity = 19/34 (55.88%), Postives = 24/34 (70.59%), Query Frame = 2
Query:    2 KPMSKQSNMVTAQGRTDPNQNTGTSIQKCDVIAS 103
            +P SK +N +TAQGR+DPNQNTG  I    V A+
Sbjct:  370 RPRSK-TNTITAQGRSDPNQNTGIIIHNSRVTAA 402          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.086e-33
Identity = 63/93 (67.74%), Postives = 77/93 (82.80%), Query Frame = 3
Query:  102 ASDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVAEL 380
            +SDL PVKGS++++LGRPWK YSRTV+MQS I +HIDPAGW  W G+FAL TLYYGEY N GPGA TSKRV W G+ VI + +EA++FTVA+L
Sbjct:  447 SSDLAPVKGSVKTFLGRPWKLYSRTVIMQSFIDNHIDPAGWFPWDGEFALSTLYYGEYANTGPGADTSKRVNWKGFKVIKDSKEAEQFTVAKL 539          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.370e-33
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  105 SDLEPVK-GSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVAE 377
            SDLE     S  +YLGRPWK YSRTV+MQS + + I P GW EW+GDFAL +L+YGEY+N GPGAG   RVKWPGY V     +AK +TVA+
Sbjct:  410 SDLEAASVNSTPTYLGRPWKLYSRTVIMQSFLSNVIRPEGWLEWNGDFALNSLFYGEYMNYGPGAGLGSRVKWPGYQVFNESTQAKNYTVAQ 501          

HSP 2 Score: 41.5874 bits (96), Expect = 2.370e-33
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = 2
Query:    2 KPMSKQSNMVTAQGRTDPNQNTGTSIQKCDVIA 100
            K +  Q N +TAQGR DPN+ TG SIQ C++ A
Sbjct:  376 KGLPNQKNSITAQGRKDPNEPTGISIQFCNITA 408          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.961e-32
Identity = 52/85 (61.18%), Postives = 62/85 (72.94%), Query Frame = 3
Query:  120 VKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVA 374
            + GS ++YLGRPWK+YSRTVVMQS I   I P+GWS WS +FALKTLYYGE+ N GPG+  S RV W GYH      EA+ FTV+
Sbjct:  424 ITGSTKTYLGRPWKQYSRTVVMQSFIDGSIHPSGWSPWSSNFALKTLYYGEFGNSGPGSSVSGRVSWAGYHPALTLTEAQGFTVS 508          

HSP 2 Score: 43.8986 bits (102), Expect = 1.961e-32
Identity = 19/34 (55.88%), Postives = 23/34 (67.65%), Query Frame = 2
Query:   11 SKQSNMVTAQGRTDPNQNTGTSIQKCDVIASLRS 112
            S   N VTAQGR+DPNQNTG SI  C +  S ++
Sbjct:  397 SSDQNYVTAQGRSDPNQNTGISIHNCRITGSTKT 430          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.962e-32
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 3
Query:  138 SYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVAEL 380
            +YLGRPWK YSRTV MQ+++ D I+P GW EW+G+FAL TLYYGEY+N GPGA   +RVKWPGYHV+    EA  FTV++L
Sbjct:  427 TYLGRPWKLYSRTVFMQNYMSDAINPVGWLEWNGNFALDTLYYGEYMNSGPGASLDRRVKWPGYHVLNTSAEANNFTVSQL 507          

HSP 2 Score: 35.039 bits (79), Expect = 1.962e-32
Identity = 15/31 (48.39%), Postives = 21/31 (67.74%), Query Frame = 2
Query:    8 MSKQSNMVTAQGRTDPNQNTGTSIQKCDVIA 100
            +  Q N +TAQGR DPN+ TG +IQ  ++ A
Sbjct:  384 LPNQKNSITAQGRKDPNEPTGFTIQFSNIAA 414          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME16_ARATH (Probable pectinesterase/pectinesterase inhibitor 16 OS=Arabidopsis thaliana GN=PME16 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.962e-32
Identity = 53/79 (67.09%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  138 SYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVA 374
            +YLGRPWKEYSRTVVMQS IG  I P+GWS WSG F LK+L+YGEY N GPG+  S RVKW G H      EA+KFTVA
Sbjct:  418 TYLGRPWKEYSRTVVMQSFIGGSIHPSGWSPWSGGFGLKSLFYGEYGNSGPGSSVSGRVKWSGCHPSLTVTEAEKFTVA 496          

HSP 2 Score: 44.2838 bits (103), Expect = 1.962e-32
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 2
Query:    2 KPMSKQSNMVTAQGRTDPNQNTGTSIQKCDVIA 100
            KP+  Q N VTAQGR++P QNTG +IQ C + A
Sbjct:  382 KPLPGQRNFVTAQGRSNPGQNTGIAIQNCRITA 414          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.494e-32
Identity = 61/90 (67.78%), Postives = 71/90 (78.89%), Query Frame = 3
Query:  108 DLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVAE 377
            DLE  KGS  +YLGRPWK YSR V M S +GDHIDP GW EW+G FAL +LYYGEY+N+G G+G  +RVKWPGYHVIT+  EA KFTVA+
Sbjct:  477 DLEASKGSYPTYLGRPWKLYSRVVYMMSDMGDHIDPRGWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVKWPGYHVITSTVEASKFTVAQ 566          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME58_ARATH (Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.271e-30
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 3
Query:  117 PVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVA 374
            PVK   ++YLGRPWKE+SRT++M + I D IDPAGW  W+GDFAL TLYY EY N GPG+  ++RVKWPG   + +P++A +FT A
Sbjct:  466 PVKSINKAYLGRPWKEFSRTIIMGTTIDDVIDPAGWLPWNGDFALNTLYYAEYENNGPGSNQAQRVKWPGIKKL-SPKQALRFTPA 550          

HSP 2 Score: 39.6614 bits (91), Expect = 2.271e-30
Identity = 16/31 (51.61%), Postives = 22/31 (70.97%), Query Frame = 2
Query:    2 KPMSKQSNMVTAQGRTDPNQNTGTSIQKCDV 94
            KPM  QS M+TAQGR+D  ++TG  +Q C +
Sbjct:  428 KPMKSQSCMITAQGRSDKRESTGLVLQNCHI 458          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.504e-30
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 3
Query:  105 SDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFT 368
            SDL+PV+GS  +YLGRPWKEYSRTV+MQS I D I PAGW EW G+FAL TL+YGE+ N G GAGTS RVKW G+ VIT+  EA+ FT
Sbjct:  475 SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFT 562          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.504e-30
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 3
Query:  105 SDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFT 368
            SDL+PV+GS  +YLGRPWKEYSRTV+MQS I D I PAGW EW G+FAL TL+YGE+ N G GAGTS RVKW G+ VIT+  EA+ FT
Sbjct:  475 SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFT 562          
The following BLAST results are available for this feature:
BLAST of CF503915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PME17_ARATH1.073e-3361.11Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME18_ARATH1.086e-3367.74Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME_PRUPE2.370e-3359.78Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME35_ARATH1.961e-3261.18Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME32_ARATH1.962e-3264.20Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME16_ARATH1.962e-3267.09Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME61_ARATH3.494e-3267.78Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME58_ARATH2.271e-3058.14Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME3_CITSI2.504e-3068.18Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI2.504e-3068.18Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-403 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503915 ID=CF503915; Name=CF503915; organism=Citrus sinensis; type=EST; length=380bp
AAAGCCCATGAGCAAGCAATCCAACATGGTCACAGCCCAAGGACGGACTG
ACCCAAATCAAAACACAGGGACTTCGATCCAAAAATGTGACGTCATAGCA
AGCCTCAGATCTGGAGCCCGTAAAGGGCTCGATCCGTTCGTACTTGGGCC
GGCCTTGGAAAGAATACTCGAGAACAGTTGTAATGCAGTCACACATCGGG
GATCATATCGATCCAGCTGGATGGTCAGAATGGAGTGGAGATTTTGCACT
GAAGACACTGTATTATGGGGAGTATCTGAATAGAGGGCCAGGTGCTGGGA
CTAGCAAAAGAGTGAAATGGCCTGGCTATCACGTTATTACAAACCCAGAA
GAAGCAAAAAAATTTACAGTAGCTGAGCTT
back to top