CF503915

Overview
NameCF503915
Unique NameCF503915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME36_ARATH (Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.516e-30
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 3
Query:  102 ASDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVA 374
            A + E VKG  +SYLGRPWK+YSRTV +++ I + IDP GW EWSG +AL TLYYGE++N G GAGT +RV WPG+HV+   EEA  FTV+
Sbjct:  409 APEFEAVKGRFKSYLGRPWKKYSRTVFLKTDIDELIDPRGWREWSGSYALSTLYYGEFMNTGAGAGTGRRVNWPGFHVLRGEEEASPFTVS 499          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.243e-29
Identity = 61/91 (67.03%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  105 SDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVAE 377
            SDL  VKG+  +YLGRPWKEYSRTV+MQS I D I P GW EWSG FAL TL Y EYLNRG GAGT+ RVKW GY VIT+  EA+ FT  +
Sbjct:  478 SDLLAVKGTFPTYLGRPWKEYSRTVIMQSDISDVIRPEGWHEWSGSFALDTLTYREYLNRGGGAGTANRVKWKGYKVITSDTEAQPFTAGQ 568          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.623e-29
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 3
Query:  102 ASDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVAE 377
            ASDL+   GS ++YLGRPWK +SRTV M S+IG H+   GW EW+  FAL TLYYGEYLN GPG+G  +RV WPGY VI +  EA +FTVAE
Sbjct:  486 ASDLQATNGSTQTYLGRPWKLFSRTVYMMSYIGGHVHTRGWLEWNTTFALDTLYYGEYLNSGPGSGLGQRVSWPGYRVINSTAEANRFTVAE 577          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME19_ARATH (Probable pectinesterase/pectinesterase inhibitor 19 OS=Arabidopsis thaliana GN=PME19 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.878e-29
Identity = 53/99 (53.54%), Postives = 75/99 (75.76%), Query Frame = 3
Query:   84 NVTS*QASDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVAEL 380
            N+T+  +SDL+    ++++YLGRPW+ +S   VMQS IGD +DPAGW+ W G+  L TL+Y EY NRGPGA TS+RVKW G+ V+ +P++A +FTVA+L
Sbjct:  412 NITA--SSDLDTT--TVKTYLGRPWRIFSTVAVMQSFIGDLVDPAGWTPWEGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKQATEFTVAKL 506          

HSP 2 Score: 33.113 bits (74), Expect = 1.878e-29
Identity = 15/34 (44.12%), Postives = 23/34 (67.65%), Query Frame = 2
Query:    2 KPMSKQSNMVTAQGRTDPNQNTGTSIQKCDVIAS 103
            +P   QSN++TAQ R   +  +G +IQKC++ AS
Sbjct:  383 QPKMGQSNVITAQSRAFKDIYSGFTIQKCNITAS 416          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.182e-29
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 3
Query:  138 SYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTV 371
            +YLGRPW+ +SRTV M+ ++G  + PAGW  WSG FAL TLYYGEY N G GA  S RVKWPGYHVI    EA+KFTV
Sbjct:  456 TYLGRPWRSHSRTVFMKCNLGALVSPAGWLPWSGSFALSTLYYGEYGNTGAGASVSGRVKWPGYHVIKTVTEAEKFTV 533          

HSP 2 Score: 35.4242 bits (80), Expect = 3.182e-29
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 2
Query:    2 KPMSKQSNMVTAQGRTDPNQNTGTSIQKCDV 94
            KPMS Q N +TAQ R +P++ TG  IQ   V
Sbjct:  420 KPMSGQKNTITAQSRKEPDETTGFVIQSSTV 450          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME33_ARATH (Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.138e-29
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 3
Query:  102 ASDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEW--SGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVAEL 380
            ASDL+PV  + ++YLGRPW+ YSR  +M+++I + I P GWS W    +FAL T++YGEY N GPG+ T  RV+W G+H IT+   A +FTV  L
Sbjct:  482 ASDLKPVIRAYKTYLGRPWQAYSRVTIMKTYIDNSISPLGWSPWLRGSNFALNTVFYGEYKNFGPGSSTRWRVRWKGFHAITSTAVASRFTVGSL 576          

HSP 2 Score: 40.0466 bits (92), Expect = 4.138e-29
Identity = 17/34 (50.00%), Postives = 25/34 (73.53%), Query Frame = 2
Query:    2 KPMSKQSNMVTAQGRTDPNQNTGTSIQKCDVIAS 103
            +P+  Q+N++TAQGR DP QNTG +I    +IA+
Sbjct:  449 RPLHGQANIITAQGRGDPFQNTGITIHSSRIIAA 482          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.374e-28
Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 3
Query:  105 SDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFT 368
            SDL PV+ S  +YLGRPWKEYSRTV+MQS I D I PAGW EW+G+FAL TL+YGEY N G GA TS RVKW G+ VIT+  EA+ +T
Sbjct:  474 SDLRPVQKSFPTYLGRPWKEYSRTVIMQSSITDVIQPAGWHEWNGNFALDTLFYGEYANTGAGAPTSGRVKWKGHKVITSSTEAQAYT 561          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.344e-28
Identity = 56/124 (45.16%), Postives = 82/124 (66.13%), Query Frame = 3
Query:    6 P*ASNPTWSQPKDGLTQIKTQGLRSKNVTS*QASDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVAE 377
            P   N   +Q +  + Q     ++  N+++   +DL P   + R+YLGRPWK YSRTV +++++ D + P GW EW+ DFAL TL+YGE++N GPG+G S RVKWPGYHV  N ++A  FTV++
Sbjct:  383 PNQKNTITAQGRKDVNQPSGFSIQFSNISA--DADLVPYLNTTRTYLGRPWKLYSRTVFIRNNMSDVVRPEGWLEWNADFALDTLFYGEFMNYGPGSGLSSRVKWPGYHVFNNSDQANNFTVSQ 504          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.344e-28
Identity = 58/91 (63.74%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  105 SDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVAE 377
            SDL+ VKGS  +YLGRPWKEYS+TV+MQS I D I P GWSEW+G FAL TL Y EY N G GAGT+ RVKW G+ VIT   EA+K+T  +
Sbjct:  483 SDLQSVKGSFPTYLGRPWKEYSQTVIMQSAISDVIRPEGWSEWTGTFALNTLTYREYSNTGAGAGTANRVKWRGFKVITAAAEAQKYTAGQ 573          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.222e-28
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 3
Query:  105 SDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFT 368
            SDL+PV+ S  +YLGRPWKEYSRTVVMQS I + I+PAGW  W G+FAL TLYYGEY N G GA TS RV W G+ VIT+  EA+ FT
Sbjct:  210 SDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFT 297          
The following BLAST results are available for this feature:
BLAST of CF503915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PME36_ARATH9.516e-3060.44Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME2_ARATH1.243e-2967.03Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME34_ARATH1.623e-2961.96Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME19_ARATH1.878e-2953.54Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME6_ARATH3.182e-2964.10Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME33_ARATH4.138e-2950.53Probable pectinesterase/pectinesterase inhibitor 3... [more]
PMEU1_SOLLC1.374e-2865.91Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME44_ARATH2.344e-2845.16Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME3_ARATH2.344e-2863.74Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME_DAUCA5.222e-2865.91Pectinesterase OS=Daucus carota PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-403 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503915 ID=CF503915; Name=CF503915; organism=Citrus sinensis; type=EST; length=380bp
AAAGCCCATGAGCAAGCAATCCAACATGGTCACAGCCCAAGGACGGACTG
ACCCAAATCAAAACACAGGGACTTCGATCCAAAAATGTGACGTCATAGCA
AGCCTCAGATCTGGAGCCCGTAAAGGGCTCGATCCGTTCGTACTTGGGCC
GGCCTTGGAAAGAATACTCGAGAACAGTTGTAATGCAGTCACACATCGGG
GATCATATCGATCCAGCTGGATGGTCAGAATGGAGTGGAGATTTTGCACT
GAAGACACTGTATTATGGGGAGTATCTGAATAGAGGGCCAGGTGCTGGGA
CTAGCAAAAGAGTGAAATGGCCTGGCTATCACGTTATTACAAACCCAGAA
GAAGCAAAAAAATTTACAGTAGCTGAGCTT
back to top