CF503915

Overview
NameCF503915
Unique NameCF503915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.827e-23
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 3
Query:   99 QASDLEPVKGSIRS--YLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDF-ALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTV 371
            Q S + P   ++ +  YLGRPWK++S TV+MQS IG  ++P GW  W  +     T++Y EY N GPGA  S+RVKW GY        A++FTV
Sbjct:  467 QKSTITPFGNNLTAPTYLGRPWKDFSTTVIMQSDIGALLNPVGWMSWVPNVEPPTTIFYAEYQNSGPGADVSQRVKWAGYKPTITDRNAEEFTV 560          

HSP 2 Score: 40.817 bits (94), Expect = 4.827e-23
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = 2
Query:    2 KPMSKQSNMVTAQGRTDPNQNTGTSIQKCDV 94
            +P+  Q N +TAQG+ DPNQNTG  IQK  +
Sbjct:  441 QPLPNQFNTITAQGKKDPNQNTGIIIQKSTI 471          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME43_ARATH (Putative pectinesterase/pectinesterase inhibitor 43 OS=Arabidopsis thaliana GN=PME43 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.334e-22
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  117 PVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITN 344
            PVK   R++LGRPWKE+SRT++M + I D IDP GW +W+  FAL TL+Y EY NRG G+G  +RV+W G   I++
Sbjct:  598 PVKAKNRAFLGRPWKEFSRTIIMNTEIDDVIDPEGWLKWNETFALNTLFYTEYRNRGRGSGQGRRVRWRGIKRISD 673          

HSP 2 Score: 28.4906 bits (62), Expect = 2.334e-22
Identity = 13/26 (50.00%), Postives = 16/26 (61.54%), Query Frame = 2
Query:    2 KPMSKQSNMVTAQGRTDPNQNTGTSI 79
            +PM  Q  +VTAQGR D  + TG  I
Sbjct:  560 RPMEHQQCIVTAQGRKDRRETTGIVI 585          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME47_ARATH (Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.538e-22
Identity = 52/101 (51.49%), Postives = 64/101 (63.37%), Query Frame = 3
Query:   69 GLRSKNVTS*QASDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTV 371
            G+   N T   A DL     S  ++LGRPWK YSRTV +QS+I D + P GW EW+G   L T+ YGEY N GPGA TSKRV+W GY ++ N  +A  FTV
Sbjct:  500 GISIINCTIGAAPDLAADPKSTMTFLGRPWKPYSRTVYIQSYISDVVQPVGWLEWNGTTGLDTISYGEYDNFGPGADTSKRVQWSGYSLL-NLVQAMNFTV 599          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.125e-21
Identity = 51/105 (48.57%), Postives = 65/105 (61.90%), Query Frame = 3
Query:   57 IKTQGLRSKNVTS*QASDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTV 371
            I  QG +S N  +        V  +  +YLGRPWK YSRTV M +++   + P GW EW G+FAL TL+YGEY N GPG  +S RVKWPGYH++ +   A  FTV
Sbjct:  417 ITAQGRKSPNQNTGFVIQNSYVLATQPTYLGRPWKLYSRTVYMNTYMSQLVQPRGWLEWFGNFALDTLWYGEYNNIGPGWRSSGRVKWPGYHIM-DKRTALSFTV 520          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.050e-20
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  135 RSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKW----PGYHV 335
            +++LGRPWK+YSRTV +  ++   I P GW  WSGDFALKTLYYGE  N GPG+  S+RV W    P  HV
Sbjct:  462 KNFLGRPWKDYSRTVFIGCNLEALITPDGWLPWSGDFALKTLYYGESKNTGPGSDRSQRVSWSSQIPDEHV 532          

HSP 2 Score: 32.3426 bits (72), Expect = 2.050e-20
Identity = 14/28 (50.00%), Postives = 17/28 (60.71%), Query Frame = 2
Query:    5 PMSKQSNMVTAQGRTDPNQNTGTSIQKC 88
            P   + N VTAQGR DP+Q+TG     C
Sbjct:  415 PEKGEKNAVTAQGRIDPSQSTGFVFLNC 442          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.179e-19
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 3
Query:  135 RSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKW 320
            +++LGRPWKE+SRTV +  ++   I P GW  W+GDFALKTLYYGEY N GPG+  S RV W
Sbjct:  513 KNFLGRPWKEFSRTVFVNCNLESLISPDGWMPWNGDFALKTLYYGEYKNTGPGSVRSSRVPW 574          

HSP 2 Score: 26.5646 bits (57), Expect = 2.179e-19
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:   20 SNMVTAQGRTDPNQNTGTSIQKCDV 94
            +N +TA GR D +Q+TG     C +
Sbjct:  471 NNAITAHGRIDASQSTGFVFLNCSI 495          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.416e-17
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  108 DLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVA 374
            +LE  K +I+SYLGRPWK+++ TV++ + IGD I P GW+EW G+   KT  Y E+ NRGPGA T++R  W    V  +  E + +TVA
Sbjct:  482 ELEADKLTIKSYLGRPWKKFATTVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPW--VKVAKSAAEVETYTVA 568          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.688e-16
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 3
Query:  108 DLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVA 374
            +LE  + +++SYLGRPWK ++ T V+ + IGD I P GW+EW G+    T  Y E+ NRGPGA T+ RV W    +  +  E ++FTVA
Sbjct:  478 ELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANTAARVPWA--KMAKSAAEVERFTVA 564          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.511e-16
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  132 IRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVA 374
            + SYLGRPWK++S TV++ S IGD I P GW  W G+   K+  Y EY NRGPGA T++RV W    +  +  E   FTVA
Sbjct:  497 VESYLGRPWKKFSTTVIINSEIGDVIRPEGWKIWDGESFHKSCRYVEYNNRGPGAITNRRVNW--VKIARSAAEVNDFTVA 575          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.334e-15
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 3
Query:  108 DLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVA 374
            +LE  + +++SYLGRPWK ++ T V+ + IGD I P GW+EW G+    T  Y E+ NRGPGA  + RV W    +  +  E ++FTVA
Sbjct:  465 ELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANPAARVPWA--KMAKSAAEVERFTVA 551          
The following BLAST results are available for this feature:
BLAST of CF503915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PME3_PHAVU4.827e-2344.68Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME43_ARATH2.334e-2253.95Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME47_ARATH9.538e-2251.49Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME22_ARATH2.125e-2148.57Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME51_ARATH2.050e-2056.34Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME64_ARATH2.179e-1959.68Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME37_ARATH5.416e-1747.19Probable pectinesterase/pectinesterase inhibitor V... [more]
PME_BRANA2.688e-1644.94Probable pectinesterase/pectinesterase inhibitor O... [more]
PME5_ARATH3.511e-1649.38Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME_BRACM1.334e-1543.82Pectinesterase/pectinesterase inhibitor (Fragment)... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-403 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503915 ID=CF503915; Name=CF503915; organism=Citrus sinensis; type=EST; length=380bp
AAAGCCCATGAGCAAGCAATCCAACATGGTCACAGCCCAAGGACGGACTG
ACCCAAATCAAAACACAGGGACTTCGATCCAAAAATGTGACGTCATAGCA
AGCCTCAGATCTGGAGCCCGTAAAGGGCTCGATCCGTTCGTACTTGGGCC
GGCCTTGGAAAGAATACTCGAGAACAGTTGTAATGCAGTCACACATCGGG
GATCATATCGATCCAGCTGGATGGTCAGAATGGAGTGGAGATTTTGCACT
GAAGACACTGTATTATGGGGAGTATCTGAATAGAGGGCCAGGTGCTGGGA
CTAGCAAAAGAGTGAAATGGCCTGGCTATCACGTTATTACAAACCCAGAA
GAAGCAAAAAAATTTACAGTAGCTGAGCTT
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