CF503915

Overview
NameCF503915
Unique NameCF503915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.275e-15
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  111 LEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKFTVA 374
            L P + ++ +YLGRPWK++S TV+M + +GD I P GW  W G+   K+  Y EY NRGPGA  ++RV W    V  +  E   FT A
Sbjct:  483 LTPERLTVATYLGRPWKKFSTTVIMSTEMGDLIRPEGWKIWDGESFHKSCRYVEYNNRGPGAFANRRVNWA--KVARSAAEVNGFTAA 568          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.320e-14
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 3
Query:  138 SYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITNPEEAKKF 365
            SYLGRPWK+YS+ V+M S I     P G+  W G    +T  Y EY N+GPGA T+ RVKW G  V+T+   A+ +
Sbjct:  343 SYLGRPWKQYSKVVIMDSTIDAIFVPEGYMPWMGSAFKETCTYYEYNNKGPGADTNLRVKWHGVKVLTSNVAAEYY 418          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.400e-11
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 3
Query:  126 GSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKW 320
            GS  ++LGRPW  YSR V   S   + + P GW++W       T+YYGEY   GPGA   +RV+W
Sbjct:  244 GSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKENTVYYGEYKCYGPGADREQRVEW 308          
BLAST of CF503915 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 9.729e-11
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 3
Query:  120 VKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKW 320
            V G  ++YLGR W+ YSR +   S++ D +DP GW EW+     K L Y E+   G G+ TS+R KW
Sbjct:  233 VHGFGKAYLGRAWRPYSRVIFYNSNLTDVVDPLGWWEWNYQGYEKQLTYAEHGCFGSGSNTSRRAKW 299          

HSP 2 Score: 21.9422 bits (45), Expect = 9.729e-11
Identity = 9/20 (45.00%), Postives = 11/20 (55.00%), Query Frame = 2
Query:   29 VTAQGRTDPNQNTGTSIQKC 88
            +TAQGRT+ N   G     C
Sbjct:  212 ITAQGRTNANDANGFVFINC 231          
The following BLAST results are available for this feature:
BLAST of CF503915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PME4_ARATH2.275e-1544.32Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]
PME_MEDSA7.320e-1447.37Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME11_ARATH3.400e-1144.62Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME55_ARATH9.729e-1143.28Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-403 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503915 ID=CF503915; Name=CF503915; organism=Citrus sinensis; type=EST; length=380bp
AAAGCCCATGAGCAAGCAATCCAACATGGTCACAGCCCAAGGACGGACTG
ACCCAAATCAAAACACAGGGACTTCGATCCAAAAATGTGACGTCATAGCA
AGCCTCAGATCTGGAGCCCGTAAAGGGCTCGATCCGTTCGTACTTGGGCC
GGCCTTGGAAAGAATACTCGAGAACAGTTGTAATGCAGTCACACATCGGG
GATCATATCGATCCAGCTGGATGGTCAGAATGGAGTGGAGATTTTGCACT
GAAGACACTGTATTATGGGGAGTATCTGAATAGAGGGCCAGGTGCTGGGA
CTAGCAAAAGAGTGAAATGGCCTGGCTATCACGTTATTACAAACCCAGAA
GAAGCAAAAAAATTTACAGTAGCTGAGCTT
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