CF503918

Overview
NameCF503918
Unique NameCF503918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length462
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:160..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 9.612e-27
Identity = 61/128 (47.66%), Postives = 84/128 (65.62%), Query Frame = 3
Query:   87 LQPIKSSRPNNLSISASA---SPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGIDYDEQ 458
            + P+KS + +N +++  A    P  +L   KF PIKE  V R M RRY  DM   A +D    GAGSAGLSCAY L +  P+++I I+E +V+PGGG WLGGQL SAM  R+PA  FLD++G+ Y+++
Sbjct:   24 MDPLKSKQQSNATVNKPAFKPEPAVNLTPIKFAPIKEHQVQRAMVRRYFQDMEERAISDVIIVGAGSAGLSCAYALGTARPDLKITILESNVAPGGGCWLGGQLMSAMVCRKPADEFLDQVGVPYEDE 151          
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.946e-11
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 3
Query:  171 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGI--DYDEQD 461
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WLGG L + + VR PA   LD+LG+  +YDE++
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEEN 103          
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.946e-11
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 3
Query:  171 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGI--DYDEQD 461
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WLGG L + + VR PA   LD+LG+  +YDE++
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEEN 103          
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.335e-11
Identity = 31/94 (32.98%), Postives = 57/94 (60.64%), Query Frame = 3
Query:  180 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGIDYDEQD 461
            +++ ++SR +  RY   +    + D    GAG +GL+ AYEL+KN   ++A+ E+  +PGGG W GG +F+ + + +    FL E+ I+Y+ ++
Sbjct:    3 MRDVLISRLIVERYFEKLRNSLELDVAIVGAGPSGLTAAYELAKN-GFRVAVFEERNTPGGGIWGGGMMFNEIVLEKELENFLKEVEIEYEVKE 95          
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  168 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGIDYDEQD 461
            +F  + E+ V+R + + +  + I   DT+    G G +GL  A EL++   + + I+E++   GGG WLGG L + + VR PA   LDEL + Y+E D
Sbjct:    5 EFADVSEAQVTRAIAKDWGNEFIDRVDTEVIIVGGGPSGLVTAKELAER-GVDVTIVEKNNYLGGGFWLGGFLMNKVTVRDPAQSVLDELDVPYEESD 101          
The following BLAST results are available for this feature:
BLAST of CF503918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
THI4_UROFA9.612e-2747.66Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI4_HALSA1.946e-1137.37Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS31.946e-1137.37Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_THEMA4.335e-1132.98Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_HALWD5.662e-1135.71Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-406 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503918 ID=CF503918; Name=CF503918; organism=Citrus sinensis; type=EST; length=462bp
CTTTCGCTCCTTCAGTTTCGTCCACCACCAATAAGCTCTTTGACTCATCC
TTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCAA
ATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTT
ATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTCT
CGTGAAATGACACGCAGGTACATGACGGACATGATCACTTATGCTGACAC
TGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATG
AGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGTT
AGCCCCGGCGGTGGCGCGTGGCTCGGTGGACAGCTCTTCTCTGCCATGGG
TGTGCGCAGACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACTACG
ATGAGCAAGACA
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