CF503921

Overview
NameCF503921
Unique NameCF503921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_VIBCH (Biosynthetic arginine decarboxylase OS=Vibrio cholerae GN=speA PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.079e-18
Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 3 
Query:  129 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFG 422
            + VN S+F S+PD W I Q+FP++P+  L+E    R V+ D+TCDSDG +++++ G    ++LP+            PY +G FL GAY+E LG +HNLFG
Sbjct:  468 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLEEMNDRRAVMLDITCDSDGAVEQYVEGQGIESTLPVPAWTSD-----KPYLMGFFLVGAYQEILGDMHNLFG 563
[Close]
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_AERHH (Biosynthetic arginine decarboxylase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=speA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.079e-18
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 3 
Query:  138 NLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSD 455
            N S+F S+PD W IGQ+FP++P+  L+     RG+L D+TCDSDG+++ ++ G    ++LP+        GE    ++G FL GAY+E LG +HNLFG      V   D
Sbjct:  463 NFSLFQSLPDAWGIGQVFPVMPLAGLERPLTRRGILMDITCDSDGQVEHYVDGLGVESTLPMPVY-----GEHEECHVGFFLVGAYQEILGDLHNLFGDTHCAEVWLDD 566
The following BLAST results are available for this feature:
BLAST of CF503921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SPEA_VIBCH8.079e-1842.57Biosynthetic arginine decarboxylase OS=Vibrio chol... [more]
SPEA_AERHH8.079e-1841.28Biosynthetic arginine decarboxylase OS=Aeromonas h... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-409 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503921 ID=CF503921; Name=CF503921; organism=Citrus sinensis; type=EST; length=509bp
ATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACTTTAGGT
ATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGCTAAGGA
AATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTATCTATTT
TCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCTATTGTT
CCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTTATCGGA
TTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTGGTGGTA
CGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAGCGTGGG
CCTTATTATTTGGGGATGTTCTTGGGTGGGGCTTATGAGGAGGCCCTCGG
TGGAGTCCACAACTTGTTTGGTGGTCCAAGCGTGGTACGCGTCTTGCAGA
GTGATGGTCCGCACAGCTTTGCTGTGACTCGGGCCATGCCTGGGCCGTCT
TGTGGGGAT
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