CF503921

Overview
NameCF503921
Unique NameCF503921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_MARAV (Biosynthetic arginine decarboxylase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=speA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.923e-19
Identity = 48/106 (45.28%), Postives = 66/106 (62.26%), Query Frame = 3
Query:  135 VNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 443
            VN S+F S+PD W I Q+FP++PI+ L+     R V+ D+TCDSDG+ID+++ G    T+LPL E          P  +G F+ GAY+E LG +HNLFG    V V
Sbjct:  466 VNFSLFQSLPDVWGIDQIFPVMPINGLNRSLNRRAVIQDITCDSDGRIDQYVDGQGIETTLPLPEH-----DPESPLLMGFFMTGAYQEILGDMHNLFGDTHSVDV 566          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_SHEDO (Biosynthetic arginine decarboxylase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=speA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.284e-19
Identity = 47/110 (42.73%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  135 VNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSD 455
            VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F+ GAY+E LG +HNLFG  +   V   D
Sbjct:  466 VNFSLFQSLPDAWGIDQVFPVLPLTCLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWDPANPYLIGFFMVGAYQEILGDMHNLFGDTNSAVVFVED 570          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_PROMH (Biosynthetic arginine decarboxylase OS=Proteus mirabilis (strain HI4320) GN=speA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.246e-18
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  129 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 443
            ++VN S+F S+PD W I QLFP++PI  LD+    R VL D+TCDSDG ID ++ G    T++P+            P  +G F+ GAY+E LG +HNLFG  + V V
Sbjct:  461 FYVNFSLFQSLPDAWGIDQLFPVLPIEGLDKPLDRRAVLLDITCDSDGIIDHYVDGDGVETTMPM-----PAYDPEYPPMIGFFMVGAYQEILGNMHNLFGDTAAVDV 563          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_NEIMB (Biosynthetic arginine decarboxylase OS=Neisseria meningitidis serogroup B GN=speA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.126e-18
Identity = 49/108 (45.37%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  132 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVL 446
            +VN S+F S+PD W I QLFP+ PI  L+E    R VL D+TCDSDG ID +I G     ++P+ +       E  P  LG F+ GAY+E LG +HNLFG  +   V+
Sbjct:  458 YVNFSLFQSLPDAWGIDQLFPVCPITGLNEPIARRAVLLDITCDSDGTIDHYIDGDGIAGTMPMPDY-----PEEEPPLLGFFMVGAYQEILGNMHNLFGDTATADVV 560          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_NEIMA (Biosynthetic arginine decarboxylase OS=Neisseria meningitidis serogroup A GN=speA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.126e-18
Identity = 49/108 (45.37%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  132 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVL 446
            +VN S+F S+PD W I QLFP+ PI  L+E    R VL D+TCDSDG ID +I G     ++P+ +       E  P  LG F+ GAY+E LG +HNLFG  +   V+
Sbjct:  458 YVNFSLFQSLPDAWGIDQLFPVCPITGLNEPIARRAVLLDITCDSDGTIDHYIDGDGIAGTMPMPDY-----PEEEPPLLGFFMVGAYQEILGNMHNLFGDTATADVV 560          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_AERS4 (Biosynthetic arginine decarboxylase OS=Aeromonas salmonicida (strain A449) GN=speA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.777e-18
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 3
Query:  138 NLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFG 422
            N S+F S+PD W IGQ+FP++P+  LD     RG+L D+TCDSDG+++ ++ G    ++LP+ +       E    Y+G FL GAY+E LG +HNLFG
Sbjct:  463 NFSLFQSLPDAWGIGQVFPVMPLTGLDRPLSRRGILMDITCDSDGQVEHYVDGLGVESTLPMPQY-----EENEVCYVGFFLVGAYQEILGDLHNLFG 555          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_VIBVY (Biosynthetic arginine decarboxylase OS=Vibrio vulnificus (strain YJ016) GN=speA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.627e-18
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  129 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSD 455
            + VN S+F S+PD W I Q+FP++P+  L      R V+ D+TCDSDG ID ++ G    ++LP+         E  PY +G FL GAY+E LG +HNLFG    V V   D
Sbjct:  468 FFVNFSLFQSLPDSWGIDQVFPVLPLSGLQNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPV-----PAWNEDEPYLMGFFLVGAYQEILGDMHNLFGDTHSVVVNVGD 574          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_VIBVU (Biosynthetic arginine decarboxylase OS=Vibrio vulnificus GN=speA PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.627e-18
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  129 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSD 455
            + VN S+F S+PD W I Q+FP++P+  L      R V+ D+TCDSDG ID ++ G    ++LP+         E  PY +G FL GAY+E LG +HNLFG    V V   D
Sbjct:  469 FFVNFSLFQSLPDSWGIDQVFPVLPLSGLQNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPV-----PAWNEDEPYLMGFFLVGAYQEILGDMHNLFGDTHSVVVNVGD 575          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_PHOLL (Biosynthetic arginine decarboxylase OS=Photorhabdus luminescens subsp. laumondii GN=speA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.736e-18
Identity = 47/112 (41.96%), Postives = 67/112 (59.82%), Query Frame = 3
Query:  129 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSD 455
            ++VN S+F S+PD W I QLFP++PI  LD+    R VL D+TCDSDG +D ++ G     ++P+       C    P  +G F+ GAY+E LG +HNLFG  + + V   D
Sbjct:  461 FYVNFSLFQSLPDAWGIDQLFPVLPIEGLDKPLDRRAVLLDITCDSDGIVDHYVDGDGVAATMPM-PAYDPDC----PPMIGFFMVGAYQEILGNMHNLFGDTAAIDVYVFD 567          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_VIBPA (Biosynthetic arginine decarboxylase OS=Vibrio parahaemolyticus GN=speA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.079e-18
Identity = 59/181 (32.60%), Postives = 86/181 (47.51%), Query Frame = 3
Query:   27 QFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRT-----------------YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGD 509
            QF  G L +EQ A  + L   +  E+      +                  + VN S+F S+PD W I Q+FP++P+  L +    R V+ D+TCDSDG ID ++ G    ++LP+         +  PY +G FL GAY+E LG +HNLFG      V+  D    F ++    G S  D
Sbjct:  417 QFATGVLNLEQRAWAEQLSLRIYFELSRKMSTKNRFHRPILDELSERLADKFFVNFSLFQSLPDAWGIDQVFPVLPLSGLGDAEERRAVMLDITCDSDGAIDHYVDGQGIESTLPV-----PAWSKDKPYLMGFFLVGAYQEILGDMHNLFGDTHSA-VVNVDEHGQFEISYINEGDSVED 591          
The following BLAST results are available for this feature:
BLAST of CF503921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SPEA_MARAV1.923e-1945.28Biosynthetic arginine decarboxylase OS=Marinobacte... [more]
SPEA_SHEDO4.284e-1942.73Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_PROMH1.246e-1844.44Biosynthetic arginine decarboxylase OS=Proteus mir... [more]
SPEA_NEIMB2.126e-1845.37Biosynthetic arginine decarboxylase OS=Neisseria m... [more]
SPEA_NEIMA2.126e-1845.37Biosynthetic arginine decarboxylase OS=Neisseria m... [more]
SPEA_AERS42.777e-1844.90Biosynthetic arginine decarboxylase OS=Aeromonas s... [more]
SPEA_VIBVY3.627e-1842.86Biosynthetic arginine decarboxylase OS=Vibrio vuln... [more]
SPEA_VIBVU3.627e-1842.86Biosynthetic arginine decarboxylase OS=Vibrio vuln... [more]
SPEA_PHOLL4.736e-1841.96Biosynthetic arginine decarboxylase OS=Photorhabdu... [more]
SPEA_VIBPA8.079e-1832.60Biosynthetic arginine decarboxylase OS=Vibrio para... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-409 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503921 ID=CF503921; Name=CF503921; organism=Citrus sinensis; type=EST; length=509bp
ATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACTTTAGGT
ATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGCTAAGGA
AATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTATCTATTT
TCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCTATTGTT
CCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTTATCGGA
TTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTGGTGGTA
CGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAGCGTGGG
CCTTATTATTTGGGGATGTTCTTGGGTGGGGCTTATGAGGAGGCCCTCGG
TGGAGTCCACAACTTGTTTGGTGGTCCAAGCGTGGTACGCGTCTTGCAGA
GTGATGGTCCGCACAGCTTTGCTGTGACTCGGGCCATGCCTGGGCCGTCT
TGTGGGGAT
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