CF503927

Overview
NameCF503927
Unique NameCF503927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGMP_PEA (Phosphoglucomutase, chloroplastic OS=Pisum sativum GN=PGMP PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.128e-46
Identity = 96/168 (57.14%), Postives = 118/168 (70.24%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            G PAPE ITDKIY NT +I+E  IA D+PDVD+S  GVT FG     F VEV D  SDY++L++++FDF+ I+ L+S P F F +DA+H VAGAYA  IFV++L A   S+ N  P EDFG GHPDPNLTYAK+LV      K    +  P+FGAA+DGD DRNMILG
Sbjct:  203 GQPAPESITDKIYGNTLSISEIKIA-DIPDVDLSNVGVTKFGS----FSVEVIDPVSDYLELLETVFDFQLIKSLISRPDFRFTFDAMHAVAGAYATPIFVDKLSASLDSISNGIPLEDFGHGHPDPNLTYAKDLV------KIMYAENGPDFGAASDGDGDRNMILG 359          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGMP_BRANA (Phosphoglucomutase, chloroplastic OS=Brassica napus GN=PGMP PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.041e-46
Identity = 95/168 (56.55%), Postives = 118/168 (70.24%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            G PAPE ITDKIY NT +I+E  +AE +PD+D+S  GVT +G     F VEV D  SDY++LM+ +FDF+ IR LLS   F F +DA+H V GAYAK IFV+ L A+  S+ N  P EDFG GHPDPNLTYAK+LV  M       +D+ P+FGAA+DGD DRNM+LG
Sbjct:  206 GQPAPESITDKIYGNTLSISEIKVAE-IPDIDLSHVGVTKYGN----FSVEVIDPISDYLELMEDVFDFDLIRGLLSRSDFGFMFDAMHAVTGAYAKPIFVDNLEAKPDSISNGVPLEDFGHGHPDPNLTYAKDLVDVM------YRDDGPDFGAASDGDGDRNMVLG 362          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGMP_SOLTU (Phosphoglucomutase, chloroplastic OS=Solanum tuberosum GN=PGMP PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 9.196e-46
Identity = 95/168 (56.55%), Postives = 118/168 (70.24%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            G PAPE ITDKIY NT +I+E  IA D+PDVD+S  GVT +G     F VEV D  +DY++LM+++FDF  IR L+S P F F +DA+H V GAYAK IFV++LGA   S+ N  P EDFG GHPDPNLTYA++LV  +        +  P+FGAA+DGD DRNMILG
Sbjct:  209 GQPAPESITDKIYGNTLSISEIKIA-DIPDVDLSQLGVTKYGN----FSVEVVDPVADYLELMENVFDFSLIRSLVSRPDFRFVFDAMHAVTGAYAKPIFVDKLGASLESIANGVPLEDFGHGHPDPNLTYAEDLVNIL------YGENGPDFGAASDGDGDRNMILG 365          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM2_PARTE (Phosphoglucomutase-2 OS=Paramecium tetraurelia GN=pp63-2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.120e-42
Identity = 87/173 (50.29%), Postives = 109/173 (63.01%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIA--EDLPDVDISAAGVTSFGGP---EGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            G PAPE  TD+IY +T  I EY     E    +++   GV  F G    +  F+V+V D+  DY  LM+ +FDF+ ++ L S+  FTF +D +HGVAG YAK IF   LG  + SLLNC P EDFGGGHPDPNLTYA +LV  + + K       P+FGAA DGDADRNMILG
Sbjct:  146 GAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKFEGTRLEKSHFEVKVVDTVQDYTSLMQKLFDFDLLKGLFSNKDFTFSFDGMHGVAGPYAKHIFGTLLGCSKESLLNCDPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGAVPQFGAACDGDADRNMILG 318          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM_SCHPO (Probable phosphoglucomutase OS=Schizosaccharomyces pombe GN=SPBC32F12.10 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.168e-42
Identity = 89/169 (52.66%), Postives = 110/169 (65.09%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLS-SPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE +T+KIY  TKTI+EY + + +P +D++  GV  +G       VEV D   DYV+LMK IFDF+ IR  LS +P FTF +DALHG+ G Y + +F +ELG   S   NC P  DFGGGHPDPNLTYAK LVAR+         +    GAA+DGD DRNMI G
Sbjct:  132 GGPAPESVTEKIYSITKTISEYKMVK-IPPLDLTTTGVRRYG----PLTVEVIDPVKDYVQLMKEIFDFDLIRSFLSKNPDFTFVFDALHGITGPYGEALFCKELGMPSSVCQNCKPLPDFGGGHPDPNLTYAKSLVARV-------DRDNIVMGAASDGDGDRNMIYG 288          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM1_PARTE (Phosphoglucomutase-1 OS=Paramecium tetraurelia GN=pp63-1 PE=1 SV=4)

HSP 1 Score: 169.474 bits (428), Expect = 8.056e-42
Identity = 86/173 (49.71%), Postives = 110/173 (63.58%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIA--EDLPDVDISAAGVTSFGGP---EGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            G PAPE  TD+IY +T  I EY     E    +++   GV  F G    +  F+V+V D+  DY +LM+ +FDF+ ++ L S+  F+F +D +HGVAG YAK IF   LG  + SLLNC P EDFGGGHPDPNLTYA +LV  + + K       P+FGAA DGDADRNMILG
Sbjct:  146 GAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKFEGTRLEKSHFEVKVVDTVQDYTQLMQKLFDFDLLKGLFSNKDFSFRFDGMHGVAGPYAKHIFGTLLGCSKESLLNCDPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGTVPQFGAACDGDADRNMILG 318          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM1_DICDI (Phosphoglucomutase-1 OS=Dictyostelium discoideum GN=pgmA PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 8.907e-41
Identity = 86/170 (50.59%), Postives = 113/170 (66.47%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVT-SFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSS-PKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE IT+ IY++T +I +     +   V +   G+  ++   +G+F +EV DSA DYV L+K+IFDF+ IRK + + P FTF +DA+ GV GAY KRIF +ELG  ES L+NC P +DF GGHPDPNLTYA  LV +M  G+        + G A+DGD DRNMILG
Sbjct:  139 GGPAPESITNAIYKHTTSITQIKTTRN---VSVDNLGLLKTYEWNDGEFVIEVIDSADDYVSLLKTIFDFDGIRKFVKNHPNFTFNFDAMSGVTGAYGKRIFTDELGIPESCLINCNPSQDFNGGHPDPNLTYAPLLVKKMNNGEF-------DMGCASDGDGDRNMILG 298          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM1_HUMAN (Phosphoglucomutase-1 OS=Homo sapiens GN=PGM1 PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 5.773e-40
Identity = 88/171 (51.46%), Postives = 109/171 (63.74%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFG--GPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSP-KFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE ITDKI++ +KTI EY++  DL  VD+   G   F        F VE+ DS   Y  +++SIFDF A+++LLS P +     DA+HGV G Y K+I  EELGA  +S +NC P EDFGG HPDPNLTYA +LV  M  G+        +FGAA DGD DRNMILG
Sbjct:  136 GGPAPEAITDKIFQISKTIEEYAVCPDLK-VDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRSIFDFSALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEH-------DFGAAFDGDGDRNMILG 298          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM1_BOVIN (Phosphoglucomutase-1 OS=Bos taurus GN=PGM1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.540e-40
Identity = 88/171 (51.46%), Postives = 109/171 (63.74%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFG--GPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSP-KFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE ITDKI++ +KTI EY+I  DL  VD+   G   F        F VE+ DS   Y  ++++IFDF A+++LLS P +     DA+HGV G Y K+I  EELGA  +S +NC P EDFGG HPDPNLTYA +LV  M  G+        +FGAA DGD DRNMILG
Sbjct:  136 GGPAPEAITDKIFQISKTIEEYAICPDL-HVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKTGEH-------DFGAAFDGDGDRNMILG 298          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM1_RAT (Phosphoglucomutase-1 OS=Rattus norvegicus GN=Pgm1 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 9.848e-40
Identity = 88/171 (51.46%), Postives = 109/171 (63.74%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFG--GPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSP-KFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE ITDKI++ +KTI EY+I  DL  VD+   G   F        F VE+ DS   Y  ++++IFDF A+++LLS P +     DA+HGV G Y K+I  EELGA  +S +NC P EDFGG HPDPNLTYA +LV  M  G+        +FGAA DGD DRNMILG
Sbjct:  136 GGPAPEAITDKIFQISKTIEEYAICPDLK-VDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEH-------DFGAAFDGDGDRNMILG 298          
The following BLAST results are available for this feature:
BLAST of CF503927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PGMP_PEA4.128e-4657.14Phosphoglucomutase, chloroplastic OS=Pisum sativum... [more]
PGMP_BRANA7.041e-4656.55Phosphoglucomutase, chloroplastic OS=Brassica napu... [more]
PGMP_SOLTU9.196e-4656.55Phosphoglucomutase, chloroplastic OS=Solanum tuber... [more]
PGM2_PARTE2.120e-4250.29Phosphoglucomutase-2 OS=Paramecium tetraurelia GN=... [more]
PGM_SCHPO6.168e-4252.66Probable phosphoglucomutase OS=Schizosaccharomyces... [more]
PGM1_PARTE8.056e-4249.71Phosphoglucomutase-1 OS=Paramecium tetraurelia GN=... [more]
PGM1_DICDI8.907e-4150.59Phosphoglucomutase-1 OS=Dictyostelium discoideum G... [more]
PGM1_HUMAN5.773e-4051.46Phosphoglucomutase-1 OS=Homo sapiens GN=PGM1 PE=1 ... [more]
PGM1_BOVIN7.540e-4051.46Phosphoglucomutase-1 OS=Bos taurus GN=PGM1 PE=2 SV... [more]
PGM1_RAT9.848e-4051.46Phosphoglucomutase-1 OS=Rattus norvegicus GN=Pgm1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-415 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503927 ID=CF503927; Name=CF503927; organism=Citrus sinensis; type=EST; length=506bp
GGAGGACCTGCTCCGGAGGGAATCACCGATAAGATCTATGAGAACACAAA
AACAATAAATGAGTACTCAATTGCAGAAGATCTACCAGATGTGGATATCT
CTGCTGCAGGTGTAACCAGCTTTGGGGGGCCTGAGGGACAATTTGATGTT
GAAGTTTTTGATTCAGCTAGTGACTATGTGAAATTGATGAAGTCAATTTT
TGACTTCGAGGCGATCCGCAAGCTACTTTCATCTCCAAAATTCACATTCT
GCTATGATGCACTACATGGAGTTGCCGGTGCATATGCCAAACGCATATTT
GTAGAAGAGCTTGGTGCACAAGAAAGCTCGTTGTTAAACTGCACACCAAA
GGAGGACTTTGGGGGAGGGCATCCAGATCCCAATTTGACTTATGCAAAAG
AGTTGGTTGCTCGTATGGGATTGGGTAAATCAAACACTCAAGATGAACCG
CCAGAGTTTGGTGCTGCTGCTGATGGTGATGCGGATCGTAACATGATCCT
TGGCAA
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