CF503927

Overview
NameCF503927
Unique NameCF503927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig507 contig Csv1_Contig507:1..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM1_RABIT (Phosphoglucomutase-1 OS=Oryctolagus cuniculus GN=PGM1 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 9.848e-40
Identity = 88/171 (51.46%), Postives = 109/171 (63.74%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFG--GPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSP-KFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE ITDKI++ +KTI EY+I  DL  VD+   G   F        F VE+ DS   Y  ++++IFDF A+++LLS P +     DA+HGV G Y K+I  EELGA  +S +NC P EDFGG HPDPNLTYA +LV  M  G+        +FGAA DGD DRNMILG
Sbjct:  136 GGPAPEAITDKIFQISKTIEEYAICPDLK-VDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEH-------DFGAAFDGDGDRNMILG 298          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM1_MACFA (Phosphoglucomutase-1 OS=Macaca fascicularis GN=PGM1 PE=2 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 9.848e-40
Identity = 89/172 (51.74%), Postives = 112/172 (65.12%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFD---VEVFDSASDYVKLMKSIFDFEAIRKLLSSP-KFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE ITDKI++ +KTI EY+I  DL  VD+   G   F   E +F+   VE+ DS   Y  ++++IFDF A+++LLS P +     DA+HGV G Y K+I  EELGA  +S +NC P EDFGG HPDPNLTYA +LV  M  G+        +FGAA DGD DRNMILG
Sbjct:  136 GGPAPEAITDKIFQISKTIEEYAICPDLK-VDLGVLGKQQFD-LENKFEPFTVEIVDSVEAYATMLRNIFDFSALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEH-------DFGAAFDGDGDRNMILG 298          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM1_MOUSE (Phosphoglucomutase-1 OS=Mus musculus GN=Pgm1 PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 1.286e-39
Identity = 88/171 (51.46%), Postives = 109/171 (63.74%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFG--GPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSP-KFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE ITDKI++ +KTI EY+I  DL  VD+   G   F        F VE+ DS   Y  ++++IFDF A+++LLS P +     DA+HGV G Y K+I  EELGA  +S +NC P EDFGG HPDPNLTYA +LV  M  G+        +FGAA DGD DRNMILG
Sbjct:  136 GGPAPEAITDKIFQISKTIEEYAICPDLK-VDLRVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEH-------DFGAAFDGDGDRNMILG 298          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM_ASPFU (Phosphoglucomutase OS=Aspergillus fumigatus GN=pgmA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.194e-39
Identity = 83/169 (49.11%), Postives = 108/169 (63.91%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPK-FTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            G PAPE +T+KIYE +K++  Y IAE +PDVD S  G  ++G      +VE+  S SDY+K++K IFDF+ I++ LS+ K F   +D +HGV G Y   IFV+ELG  + S +NC P  DF GGHPDPNL YA ELV  +         +   FGAA+DGD DRNMI G
Sbjct:  133 GAPAPESVTNKIYETSKSLTSYKIAE-IPDVDTSTIGTKTYG----PLEVEIVHSTSDYLKMLKEIFDFDLIKEFLSTHKDFKVLFDGMHGVTGPYGVDIFVKELGLPQDSTMNCVPSPDFNGGHPDPNLVYAHELVEAV-------DKKGIHFGAASDGDGDRNMIYG 289          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM_ASPOR (Phosphoglucomutase OS=Aspergillus oryzae GN=pgmA PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.888e-39
Identity = 84/169 (49.70%), Postives = 108/169 (63.91%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPK-FTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            G PAPE +T+KIYE +KT+  Y+ AE +P++D+S+ G  ++G      +VEV  S SDYVK+MK IFDF+ I++ L++ K F   +D +HGV G Y   IFV ELG   SS +NC P  DF GGHPDPNL YA ELV  +             FGAA+DGD DRNMI G
Sbjct:  133 GAPAPETVTNKIYETSKTLTSYNYAE-IPELDLSSIGSKTYG----PLEVEVVHSTSDYVKMMKEIFDFDLIKEFLNTHKDFKVLFDGMHGVTGPYGVDIFVNELGLPSSSTMNCVPSPDFNGGHPDPNLVYAHELVEAV-------DKNGIHFGAASDGDGDRNMIYG 289          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM_EMENI (Phosphoglucomutase OS=Emericella nidulans GN=pgmB PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.857e-38
Identity = 85/169 (50.30%), Postives = 101/169 (59.76%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSS-PKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            G PAPE +T+KIYE +K++  Y    DLP+VD +  G  S+G      +VEV  S  DYV +MK IFDF+ IR  L   P F   +D +HGV G Y   IFV ELG   SS +NC PK DFGGGHPDPNL YA ELV  +             FGAA+DGD DRNMI G
Sbjct:  133 GAPAPEQVTNKIYEVSKSLTSYKYI-DLPEVDTTTVGTRSYG----PLEVEVVHSTEDYVSMMKEIFDFDLIRSFLKKHPDFKVLFDGMHGVTGPYGIDIFVNELGLPSSSTMNCIPKPDFGGGHPDPNLVYAHELVEAV-------DKNGIHFGAASDGDGDRNMIYG 289          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM52_HUMAN (Putative PGM5-like protein 2 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 9.539e-35
Identity = 80/171 (46.78%), Postives = 105/171 (61.40%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFG--GPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSP-KFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAP+ ++DKIY+ +KTI EY+I  DL  +D+S  G   F        F VE+ D    Y+ L+++IFDF AI+ LL+ P +     DA+HGV G Y +++  +ELGA  +S +NC P EDFGG HPDPNLTYA  L+  M  G+         FGAA D D DR MILG
Sbjct:   80 GGPAPDVVSDKIYQISKTIEEYAICPDL-QIDLSRLGRQEFDLENKFKPFRVEIVDPVDIYLNLLRTIFDFHAIKSLLTGPSQLKIRVDAMHGVMGPYVRKVLCDELGAPANSAINCVPLEDFGGQHPDPNLTYAMTLLEAMKGGEYG-------FGAAFDADGDRYMILG 242          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM_DROSI (Phosphoglucomutase OS=Drosophila simulans GN=Pgm PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.627e-34
Identity = 80/172 (46.51%), Postives = 105/172 (61.05%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPK----FTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAP+  T+ IY+ T  I EY +  +L  +DIS  GVTSF      F VEV DS ++YV+ M+ IFDF  ++  +S            DA++GV G+Y + IF+  LGA ESS+++ TP  DFGG HPDPNLTYAK+LV  +  G         + GAA DGD DRNMI+G
Sbjct:  135 GGPAPDAFTNHIYKITTEIKEYKLVRNL-QIDISKVGVTSFDIAGKPFTVEVIDSVANYVRHMEEIFDFAKLKDFVSGKATGKPLKMRIDAMNGVTGSYVREIFLNRLGATESSVVHTTPLPDFGGLHPDPNLTYAKDLVDTVAQGDY-------DIGAAFDGDGDRNMIIG 298          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM_DROME (Phosphoglucomutase OS=Drosophila melanogaster GN=Pgm PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.627e-34
Identity = 80/172 (46.51%), Postives = 105/172 (61.05%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPK----FTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAP+  T+ IY+ T  I EY +  +L  +DIS  GVTSF      F VEV DS ++YV+ M+ IFDF  ++  +S            DA++GV G+Y + IF+  LGA ESS+++ TP  DFGG HPDPNLTYAK+LV  +  G         + GAA DGD DRNMI+G
Sbjct:  135 GGPAPDAFTNHIYKITTEIKEYKLVRNL-QIDISKVGVTSFDIAGKPFTVEVIDSVANYVRHMEEIFDFAKLKDFVSGKATGKPLKMRIDAMNGVTGSYVREIFLNRLGATESSVVHTTPLPDFGGLHPDPNLTYAKDLVDTVAQGDY-------DIGAAFDGDGDRNMIIG 298          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM5_MOUSE (Phosphoglucomutase-like protein 5 OS=Mus musculus GN=Pgm5 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.627e-34
Identity = 80/171 (46.78%), Postives = 105/171 (61.40%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFG--GPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSP-KFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAP+ ++DKIY+ +KTI EY+I  DL  +D+S  G   F        F VE+ D    Y+ L+++IFDF AI+ LL+ P +     DA+HGV G Y +++  +ELGA  +S +NC P EDFGG HPDPNLTYA  L+  M  G+         FGAA D D DR MILG
Sbjct:  141 GGPAPDVVSDKIYQISKTIEEYAICPDLR-IDLSRLGRQEFDLENKFKPFRVEIVDPVDIYLNLLRNIFDFNAIKSLLTGPSQLKIRVDAMHGVMGPYVRKVLCDELGAPANSAINCVPLEDFGGQHPDPNLTYATTLLEAMKGGEYG-------FGAAFDADGDRYMILG 303          
The following BLAST results are available for this feature:
BLAST of CF503927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PGM1_RABIT9.848e-4051.46Phosphoglucomutase-1 OS=Oryctolagus cuniculus GN=P... [more]
PGM1_MACFA9.848e-4051.74Phosphoglucomutase-1 OS=Macaca fascicularis GN=PGM... [more]
PGM1_MOUSE1.286e-3951.46Phosphoglucomutase-1 OS=Mus musculus GN=Pgm1 PE=1 ... [more]
PGM_ASPFU2.194e-3949.11Phosphoglucomutase OS=Aspergillus fumigatus GN=pgm... [more]
PGM_ASPOR4.888e-3949.70Phosphoglucomutase OS=Aspergillus oryzae GN=pgmA P... [more]
PGM_EMENI1.857e-3850.30Phosphoglucomutase OS=Emericella nidulans GN=pgmB ... [more]
PGM52_HUMAN9.539e-3546.78Putative PGM5-like protein 2 OS=Homo sapiens PE=5 ... [more]
PGM_DROSI1.627e-3446.51Phosphoglucomutase OS=Drosophila simulans GN=Pgm P... [more]
PGM_DROME1.627e-3446.51Phosphoglucomutase OS=Drosophila melanogaster GN=P... [more]
PGM5_MOUSE1.627e-3446.78Phosphoglucomutase-like protein 5 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-415 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503927 ID=CF503927; Name=CF503927; organism=Citrus sinensis; type=EST; length=506bp
GGAGGACCTGCTCCGGAGGGAATCACCGATAAGATCTATGAGAACACAAA
AACAATAAATGAGTACTCAATTGCAGAAGATCTACCAGATGTGGATATCT
CTGCTGCAGGTGTAACCAGCTTTGGGGGGCCTGAGGGACAATTTGATGTT
GAAGTTTTTGATTCAGCTAGTGACTATGTGAAATTGATGAAGTCAATTTT
TGACTTCGAGGCGATCCGCAAGCTACTTTCATCTCCAAAATTCACATTCT
GCTATGATGCACTACATGGAGTTGCCGGTGCATATGCCAAACGCATATTT
GTAGAAGAGCTTGGTGCACAAGAAAGCTCGTTGTTAAACTGCACACCAAA
GGAGGACTTTGGGGGAGGGCATCCAGATCCCAATTTGACTTATGCAAAAG
AGTTGGTTGCTCGTATGGGATTGGGTAAATCAAACACTCAAGATGAACCG
CCAGAGTTTGGTGCTGCTGCTGATGGTGATGCGGATCGTAACATGATCCT
TGGCAA
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