CF503927

Overview
NameCF503927
Unique NameCF503927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig507 contig Csv1_Contig507:1..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM5_HUMAN (Phosphoglucomutase-like protein 5 OS=Homo sapiens GN=PGM5 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.775e-34
Identity = 80/171 (46.78%), Postives = 105/171 (61.40%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFG--GPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSP-KFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAP+ ++DKIY+ +KTI EY+I  DL  +D+S  G   F        F VE+ D    Y+ L+++IFDF AI+ LL+ P +     DA+HGV G Y +++  +ELGA  +S +NC P EDFGG HPDPNLTYA  L+  M  G+         FGAA D D DR MILG
Sbjct:  141 GGPAPDVVSDKIYQISKTIEEYAICPDLR-IDLSRLGRQEFDLENKFKPFRVEIVDPVDIYLNLLRTIFDFHAIKGLLTGPSQLKIRIDAMHGVMGPYVRKVLCDELGAPANSAINCVPLEDFGGQHPDPNLTYATTLLEAMKGGEYG-------FGAAFDADGDRYMILG 303          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM2_YEAST (Phosphoglucomutase-2 OS=Saccharomyces cerevisiae GN=PGM2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.349e-33
Identity = 76/173 (43.93%), Postives = 101/173 (58.38%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFT----FCYDALHGVAGAYAKRIFVEELGAQESSLL-NCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE +T+ I+E +K +  Y I +D P++D+   G     GP     V++ D   DYV  +K IFDF+ I+K + + + T      +D+++GV G Y K IFV+E G     +L N  P  DFGG HPDPNLTYA  LV R+         E  EFGAA+DGD DRNMI G
Sbjct:  138 GGPAPESVTNAIWEISKKLTSYKIIKDFPELDLGTIGKNKKYGP---LLVDIIDITKDYVNFLKEIFDFDLIKKFIDNQRSTKNWKLLFDSMNGVTGPYGKAIFVDEFGLPADEVLQNWHPSPDFGGMHPDPNLTYASSLVKRV-------DREKIEFGAASDGDGDRNMIYG 300          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM_RHIRD (Phosphoglucomutase OS=Rhizobium radiobacter GN=pgm PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.289e-31
Identity = 78/168 (46.43%), Postives = 100/168 (59.52%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE ITD IY  +K I+ Y I+ D  D+D+   G  SF   E    V+V D  +DY  LM+ +FDF AIR L++   F    D++  V G YA  I  + LGA + S+ N TP  DFGG HPDPNL +AKEL   +         E P+FGAA+DGD DRNM++G
Sbjct:  131 GGPAPEKITDAIYARSKVIDSYKIS-DAADIDLDKIG--SFKVDE--LTVDVIDPVADYAALMEELFDFGAIRSLIAGG-FKVVVDSMSAVTGPYAVEILEKRLGAPKGSVRNATPLPDFGGHHPDPNLVHAKELYDDV------MSPEGPDFGAASDGDGDRNMVVG 286          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM1_YEAST (Phosphoglucomutase-1 OS=Saccharomyces cerevisiae GN=PGM1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.175e-30
Identity = 73/173 (42.20%), Postives = 101/173 (58.38%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPK----FTFCYDALHGVAGAYAKRIFVEELGAQ-ESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE +T+ I+E +K +  Y I ++ P ++++  G     GP     V++ D A  YV+ +K IFDF+ I+  L+  +    +   +D+L+G+ G Y K IFV+E G   E  L N  P  DFGG HPDPNLTYA+ LV R+         E   FGAA+DGD DRNMI G
Sbjct:  139 GGPAPESVTNAIWEASKKLTHYKIIKNFPKLNLNKLGKNQKYGP---LLVDIIDPAKAYVQFLKEIFDFDLIKSFLAKQRKDKGWKLLFDSLNGITGPYGKAIFVDEFGLPAEEVLQNWHPLPDFGGLHPDPNLTYARTLVDRV-------DREKIAFGAASDGDGDRNMIYG 301          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM_ENTHI (Phosphoglucomutase OS=Entamoeba histolytica GN=pgm PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.475e-27
Identity = 69/168 (41.07%), Postives = 90/168 (53.57%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAP  +T KI E+ + I E  IAE    ++I + G         +  V V D   DY+  +   FDFE +++ +S        D  + V G Y K++F E LG  ESSL N  P  DFGG HPDPNLTYA ELV  +       +D P + G A DGD DRN+I+G
Sbjct:  137 GGPAPIEVTSKIEESARNIKEIVIAELNKPLNIDSVGDIEIECEGKKAVVHVIDPLEDYIAYLHECFDFENLKQFVSKYHLKVQVDGFNAVTGIYNKKVFCELLGLPESSLKNAIPMPDFGGKHPDPNLTYAAELVHAV-----IPEDSPYDIGFAFDGDGDRNLIVG 299          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGM_ENTDI (Phosphoglucomutase OS=Entamoeba dispar GN=pgm PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.286e-27
Identity = 69/168 (41.07%), Postives = 88/168 (52.38%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAP  +T KI E+ + I E  IAE    + I   G         +  V V D   DY+  +   FDFE +++ +S        D  + V G Y K++F E LG  ESSL N  P  DFGG HPDPNLTYA ELV  +       +D P + G A DGD DRN+I+G
Sbjct:  137 GGPAPLEVTSKIEESARNIKEIVIAELNKPLTIDTIGDIEIECEGKKAIVHVIDPLEDYIAYLHECFDFEKLKQFVSKYHLKVQVDGFNAVTGIYNKKVFCELLGLPESSLKNAIPMPDFGGKHPDPNLTYAAELVHAV-----IPEDSPYDIGFAFDGDGDRNLIVG 299          
The following BLAST results are available for this feature:
BLAST of CF503927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PGM5_HUMAN2.775e-3446.78Phosphoglucomutase-like protein 5 OS=Homo sapiens ... [more]
PGM2_YEAST2.349e-3343.93Phosphoglucomutase-2 OS=Saccharomyces cerevisiae G... [more]
PGM_RHIRD1.289e-3146.43Phosphoglucomutase OS=Rhizobium radiobacter GN=pgm... [more]
PGM1_YEAST3.175e-3042.20Phosphoglucomutase-1 OS=Saccharomyces cerevisiae G... [more]
PGM_ENTHI1.475e-2741.07Phosphoglucomutase OS=Entamoeba histolytica GN=pgm... [more]
PGM_ENTDI3.286e-2741.07Phosphoglucomutase OS=Entamoeba dispar GN=pgm PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-415 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503927 ID=CF503927; Name=CF503927; organism=Citrus sinensis; type=EST; length=506bp
GGAGGACCTGCTCCGGAGGGAATCACCGATAAGATCTATGAGAACACAAA
AACAATAAATGAGTACTCAATTGCAGAAGATCTACCAGATGTGGATATCT
CTGCTGCAGGTGTAACCAGCTTTGGGGGGCCTGAGGGACAATTTGATGTT
GAAGTTTTTGATTCAGCTAGTGACTATGTGAAATTGATGAAGTCAATTTT
TGACTTCGAGGCGATCCGCAAGCTACTTTCATCTCCAAAATTCACATTCT
GCTATGATGCACTACATGGAGTTGCCGGTGCATATGCCAAACGCATATTT
GTAGAAGAGCTTGGTGCACAAGAAAGCTCGTTGTTAAACTGCACACCAAA
GGAGGACTTTGGGGGAGGGCATCCAGATCCCAATTTGACTTATGCAAAAG
AGTTGGTTGCTCGTATGGGATTGGGTAAATCAAACACTCAAGATGAACCG
CCAGAGTTTGGTGCTGCTGCTGATGGTGATGCGGATCGTAACATGATCCT
TGGCAA
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