CF503936

Overview
NameCF503936
Unique NameCF503936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3768 contig Csv1_Contig3768:614..1057. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13E_HORVU (Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 8.603e-27
Identity = 64/144 (44.44%), Postives = 90/144 (62.50%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPET-LAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            I +FL   G+PF  N YP+FAY+ D      L +   QP     D+G G+ Y ++FDA VD++++AL   G  +V +VV+E+GWP  G     G SVENA+ YN  LI H+RS  GTP  PG +++TYIFA+++E+ KPG   E
Sbjct:  159 IARFLDSTGAPFLANVYPYFAYRDDRGQNIRLNYATLQPGTTVRDNGNGLTYTSLFDAMVDSIYAALEKAGTPNVRVVVSESGWPSAGG---FGASVENARNYNQGLIDHIRS--GTPKRPG-AIETYIFAMFNENRKPGDEVE 296          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.467e-26
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQP---NAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            +LQFL   GSP  +N YP++ Y  +     L  CLF+P   +   VD  T + Y N+ DA VDA + ++  +   DV ++V E+GWP +GD  E   +++NA  YN NLI H+    GTPL P  +   YI+ L++EDL+  P SE
Sbjct:   93 LLQFLSKTGSPLMMNLYPYYVYMQNKGVVPLDNCLFEPLTPSKEMVDPNTLLHYTNVLDAMVDAAYVSMKNLNVSDVAVLVTESGWPSKGDSKEPYATIDNADTYNSNLIKHVFDRTGTPLHPEMTSSVYIYELFNEDLRAPPVSE 238          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.916e-26
Identity = 57/142 (40.14%), Postives = 84/142 (59.15%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQP---NAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPG 431
            +L FL+   S   +N YP+  Y        L + LF+P   N   VD+ T ++Y N FDA VDA + A+  + F ++ ++V E+GWP +G+ NE   +++NA  YN NLI H+ +  GTP  PG +V TYI+ LY+ED K G
Sbjct:  190 LLSFLQSTNSYLMVNVYPYIDYMQSNGVIPLDYALFKPIPPNKEAVDANTLVRYSNAFDAMVDATYFAMAFLNFTNIPVLVTESGWPSKGETNEPDATLDNANTYNSNLIRHVLNKTGTPKRPGIAVSTYIYELYNEDTKAG 331          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.576e-26
Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 3
Query:    3 TMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQ---PNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            T+  +LQFLK+ GS F +N YP++ Y +      L + LF+   P    VD  T + Y +MFDA VDA + ++ A+ F  + +VV ETGWP  G  +E   +V NA+ +N NLI  + + +G P  P   ++TYI+ LY+ED + GP SE
Sbjct:  180 TVYQLLQFLKNTGSFFMLNAYPYYGYTTANGIFPLDYALFKQLSPVKQIVDPNTLLHYNSMFDAMVDAAYYSMEALNFSKIPVVVTETGWPSSGGSDEAAATVANAETFNTNLIKRVLNNSGPPSQPDIPINTYIYELYNEDKRSGPVSE 329          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 59/143 (41.26%), Postives = 89/143 (62.24%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            I+ FL  H  P   N YP+F +  D  P  L + LF+   G  D+G    Y N+FDA VD+++ A   +G +++EI+V+E+GWP  G P+    ++ENA  Y  NLI H++  AGTP  PG++++TY+FA++DE+ K G  SE
Sbjct:  185 IIGFLSRHNLPLLANIYPYFGHADDNVP--LPYALFKQQ-GLNDAG----YQNLFDALVDSMYFATEKLGGQNIEIIVSESGWPSEGHPSA---TLENAMTYYTNLINHVKGGAGTPKKPGRTIETYLFAMFDENRKDGKPSE 317          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13L_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL153 OS=Nicotiana tabacum GN=GGL4 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.794e-24
Identity = 57/143 (39.86%), Postives = 90/143 (62.94%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            I+QFL  +  P   N YP+F + S+     L++ LF    G+  +G    Y N+FDA +D+++ A+   G  +VEI+V+E+GWP  G+      ++ENA+ Y  NLI H++  AGTP  PGKS++TY+FA++DE++K G  +E
Sbjct:  190 IIQFLAQNNLPLLANVYPYFVHISNTADVPLSYALFTQR-GKNSAG----YQNLFDAILDSMYFAVEKAGGPNVEIIVSESGWPSEGNS---AATIENAQTYYRNLIDHVKRGAGTPKKPGKSIETYLFAMFDENVKKGEITE 324          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13I_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-N (Fragment) OS=Nicotiana tabacum GN=PRN PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.816e-24
Identity = 55/143 (38.46%), Postives = 86/143 (60.14%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            I+QFL  H  P   N YP+F +  +     L++ LF              Y N+FDA +D+++ A+   G ++VEI+V+E+GWP  G+      ++ENA+ Y  NLI H++S AGTP  PGK+++TY+FA++DE+ K G  +E
Sbjct:  122 IIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALFTQQEANPAG-----YQNLFDALLDSMYFAVEKAGGQNVEIIVSESGWPSEGNS---AATIENAQTYYENLINHVKSGAGTPKKPGKAIETYLFAMFDENNKEGDITE 256          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13G_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.816e-24
Identity = 55/143 (38.46%), Postives = 86/143 (60.14%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            I+QFL  H  P   N YP+F +  +     L++ LF              Y N+FDA +D+++ A+   G ++VEI+V+E+GWP  G+      ++ENA+ Y  NLI H++S AGTP  PGK+++TY+FA++DE+ K G  +E
Sbjct:  190 IIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALFTQQEANPAG-----YQNLFDALLDSMYFAVEKAGGQNVEIIVSESGWPSEGNS---AATIENAQTYYENLINHVKSGAGTPKKPGKAIETYLFAMFDENNKEGDITE 324          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.816e-24
Identity = 61/147 (41.50%), Postives = 87/147 (59.18%), Query Frame = 3
Query:    6 MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRV-DSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            M  I + L    +P   N YP+FAY  +PR   L +  FQP A  V D+G G+ Y N+F+A VDA+++AL   G   V +VV+E+GWP  G       + ENA+AYN  LI H+    GTP  PG  ++ Y+FA+++E+ KPG  +E
Sbjct:  150 MVDIARHLASTNAPLLANVYPYFAYSGNPRDIKLNYATFQPGATPVRDAGNGLIYTNLFNAMVDAMYAALEKAGAPSVRVVVSESGWPSAGG---FAATPENARAYNQGLIDHVAH--GTPKKPG-HMEAYVFAMFNENQKPGLETE 290          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.816e-24
Identity = 54/138 (39.13%), Postives = 90/138 (65.22%), Query Frame = 3
Query:   12 GILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            G+++FL ++ +P  +N Y +FAY ++P+  +L + LF+  +  V  G+ + Y N+FDA VDAV++AL   G   + IVV+E+GWP  G       S++NA+ YN NL+ +++   GTP  PG  ++TY+FA++DE+ K
Sbjct:  191 GVIRFLVNNNAPLMVNVYSYFAYTANPKDISLDYALFRSPSVVVQDGS-LGYRNLFDASVDAVYAALEKAGGGSLNIVVSESGWPSSGG---TATSLDNARTYNTNLVRNVKQ--GTPKRPGAPLETYVFAMFDENQK 322          
The following BLAST results are available for this feature:
BLAST of CF503936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E13E_HORVU8.603e-2744.44Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vul... [more]
E131_ARATH1.467e-2639.73Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E132_ARATH1.916e-2640.14Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E134_ARATH5.576e-2640.00Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E13A_SOLLC1.052e-2441.26Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]
E13L_TOBAC1.794e-2439.86Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13I_TOBAC6.816e-2438.46Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13G_TOBAC6.816e-2438.46Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13D_HORVU6.816e-2441.50Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E13A_SOYBN6.816e-2439.13Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-424 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503936 ID=CF503936; Name=CF503936; organism=Citrus sinensis; type=EST; length=444bp
ACACTATGAGAGGGATTTTGCAGTTTCTTAAAGACCACGGCTCCCCTTTT
ACCATCAACCCGTACCCGTTTTTCGCTTATCAAAGTGACCCGAGACCCGA
GACTCTTGCCTTCTGTTTGTTTCAACCCAACGCGGGACGAGTTGACTCCG
GGACCGGGATCAAATACATGAACATGTTCGACGCCCAGGTTGATGCTGTA
CATTCAGCCTTGAATGCAATGGGGTTCAAGGATGTCGAGATTGTGGTTGC
AGAGACAGGGTGGCCTTACCGCGGAGACCCGAATGAGGTTGGACCTAGTG
TTGAGAATGCCAAGGCCTATAACGGGAACTTGATTGCTCACCTTAGATCA
ATGGCTGGAACTCCATTGATGCCTGGAAAATCTGTGGATACATATATTTT
TGCTCTCTATGATGAGGACTTGAAGCCTGGCCCTACCTCTGAAC
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