CF503936

Overview
NameCF503936
Unique NameCF503936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3768 contig Csv1_Contig3768:614..1057. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.421e-21
Identity = 56/138 (40.58%), Postives = 82/138 (59.42%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQ-PNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            I+ F++   SP  +N YP+F+Y  +PR  +L + LF  PN    D   G  Y N+FDA  DAV++AL+  G   +EIVV+E+GWP  G       +  NA  Y  NLI H++   G+P  P K ++TY+FA++DE+ K
Sbjct:  193 IIGFVRRINSPLLVNIYPYFSYAGNPRDISLPYALFTAPNVVVQDGSLG--YRNLFDAMSDAVYAALSRAGGGSIEIVVSESGWPSAG---AFAATTNNAATYYKNLIQHVK--RGSPRRPNKVIETYLFAMFDENNK 323          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13D_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41B PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.421e-21
Identity = 52/143 (36.36%), Postives = 86/143 (60.14%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            I++FL  +  P   N YP+F +  +     L++ LF        + TG  Y N+FDA +D+++ A+   G  +VEI+V+E+GWP  G+      ++ENA+ Y  NL+ H++  AGTP  PG+ ++TY+FA++DE+ K G  +E
Sbjct:  194 IIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALFNQQE---TNSTG--YQNLFDALLDSIYFAVEKAGGPNVEIIVSESGWPSEGNS---AATIENAQTYYRNLVNHVKGGAGTPKKPGRIIETYLFAMFDENEKQGEITE 328          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 7.054e-21
Identity = 56/138 (40.58%), Postives = 81/138 (58.70%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPR-PETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            I++FL ++G PFT+N YP+ +  ++P  P   AF  F  NA  ++ G G  Y NMFDA  D +  AL   GF ++ I++ E GWP  GD N    +++ AK +N   +AH+    GTP  PG  +D Y+F+L DED K
Sbjct:  185 IVKFLSENGGPFTVNIYPYISLYTNPDFPVDYAF--FDGNAQPLNDG-GTFYYNMFDANYDTLVHALEKNGFGNMPIIIGEIGWPTDGDSN---ANLDYAKKFNQGFMAHISGGKGTPRRPG-PIDAYLFSLIDEDAK 315          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13B_SOLLC (Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.501e-20
Identity = 55/137 (40.15%), Postives = 84/137 (61.31%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++A++  G   V IVV+E+GWP  G     G + ENA+ Y  NLI H +   G+P  PG  ++TYIFA++DE+ K
Sbjct:  187 IVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSR-QYRNLFDAMLDSVYAAMDRTGGGSVGIVVSESGWPSAG---AFGATHENAQTYLRNLIQHAKE--GSPRKPG-PIETYIFAMFDENNK 316          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13B_PHAVU (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.501e-20
Identity = 54/138 (39.13%), Postives = 82/138 (59.42%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLF-QPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            I+ +L    +P  +N YP+F+Y  +PR  +L + LF  PN    D   G  Y N+FDA +D+VH+A++      VE+VV+E+GWP  G     G + +NA+ Y  NL+   R+  G+P  P K  +TYIFA++DE+ K
Sbjct:  162 IIGYLLYASAPLHVNVYPYFSYSGNPRDISLPYALFTSPNVVVRDGQYG--YQNLFDAMLDSVHAAIDNTRIGYVEVVVSESGWPSDGG---FGATYDNARVYLDNLVR--RAGRGSPRRPSKPTETYIFAMFDENQK 292          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13B_BRACM (Glucan endo-1,3-beta-glucosidase OS=Brassica campestris GN=BGL PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.572e-20
Identity = 53/139 (38.13%), Postives = 86/139 (61.87%), Query Frame = 3
Query:    6 MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGR--VDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDE 416
            ++ ++ FL +  SP  +N Y +F Y +  R  +L F L QPN+     D    ++Y+N FDA +D+V++AL   G   +++VV+E+GWP +G P   G SV NA+AY  NL  H+ +  G+P    ++++TYIFA++DE
Sbjct:  179 LQPVIGFLVNKRSPLLVNIYTYFGYMN--RDVSLQFALLQPNSNNEFTDPNNQLRYLNFFDANLDSVYAALEKSGGGSLDVVVSESGWPTQGGP---GASVPNAEAYVNNLRLHV-NKNGSPKRQ-EAIETYIFAMFDE 310          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13H_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.971e-20
Identity = 56/138 (40.58%), Postives = 84/138 (60.87%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRV-DSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            I+ FL  + +P  +N YP+FA  ++   + L + LF  +   V D+G G  Y N+FDA +DA +SAL       +EIVV+E+GWP  G       S++NA+ YN NLI+H++   G+P  P   ++TY+FAL+DED K
Sbjct:  185 IINFLVTNRAPLLVNLYPYFAIANNADIK-LEYALFTSSEVVVNDNGRG--YRNLFDAILDATYSALEKASGSSLEIVVSESGWPSAGAGQLT--SIDNARTYNNNLISHVK--GGSPKRPSGPIETYVFALFDEDQK 315          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13F_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.971e-20
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++AL   G   V IVV+E+GWP  G     G + +NA  Y  NLI H +   G+P  PG  ++TYIFA++DE+ K
Sbjct:  195 IVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLFTAPNVVVQDGSR-QYRNLFDAMLDSVYAALERSGGASVGIVVSESGWPSAG---AFGATYDNAATYLRNLIQHAKE--GSPRKPG-PIETYIFAMFDENNK 324          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13E_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.971e-20
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++AL   G   V IVV+E+GWP  G     G + +NA  Y  NLI H +   G+P  PG  ++TYIFA++DE+ K
Sbjct:  195 IVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLFTAPNVVVQDGSR-QYRNLFDAMLDSVYAALERSGGASVGIVVSESGWPSAG---AFGATYDNAATYLRNLIQHAKE--GSPRKPG-PIETYIFAMFDENNK 324          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13B_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.971e-20
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++AL   G   V IVV+E+GWP  G     G + +NA  Y  NLI H +   G+P  PG  ++TYIFA++DE+ K
Sbjct:  196 IVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLFTAPNVVVQDGSR-QYRNLFDAMLDSVYAALERSGGASVGIVVSESGWPSAG---AFGATYDNAATYLRNLIQHAKE--GSPRKPG-PIETYIFAMFDENNK 325          
The following BLAST results are available for this feature:
BLAST of CF503936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GUB_NICPL1.421e-2140.58Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E13D_TOBAC1.421e-2136.36Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E136_ARATH7.054e-2140.58Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E13B_SOLLC3.501e-2040.15Glucan endo-1,3-beta-glucosidase B OS=Solanum lyco... [more]
E13B_PHAVU3.501e-2039.13Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13B_BRACM4.572e-2038.13Glucan endo-1,3-beta-glucosidase OS=Brassica campe... [more]
E13H_TOBAC5.971e-2040.58Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13F_TOBAC5.971e-2040.15Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13E_TOBAC5.971e-2040.15Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_TOBAC5.971e-2040.15Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-424 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503936 ID=CF503936; Name=CF503936; organism=Citrus sinensis; type=EST; length=444bp
ACACTATGAGAGGGATTTTGCAGTTTCTTAAAGACCACGGCTCCCCTTTT
ACCATCAACCCGTACCCGTTTTTCGCTTATCAAAGTGACCCGAGACCCGA
GACTCTTGCCTTCTGTTTGTTTCAACCCAACGCGGGACGAGTTGACTCCG
GGACCGGGATCAAATACATGAACATGTTCGACGCCCAGGTTGATGCTGTA
CATTCAGCCTTGAATGCAATGGGGTTCAAGGATGTCGAGATTGTGGTTGC
AGAGACAGGGTGGCCTTACCGCGGAGACCCGAATGAGGTTGGACCTAGTG
TTGAGAATGCCAAGGCCTATAACGGGAACTTGATTGCTCACCTTAGATCA
ATGGCTGGAACTCCATTGATGCCTGGAAAATCTGTGGATACATATATTTT
TGCTCTCTATGATGAGGACTTGAAGCCTGGCCCTACCTCTGAAC
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