CF503936

Overview
NameCF503936
Unique NameCF503936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.971e-20
Identity = 53/138 (38.41%), Postives = 80/138 (57.97%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLF-QPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            I+ FL    SP   N YP+F Y  +PR  +L + LF  P+    D   G  Y N+FDA +DA++SAL       +E+VV+E+GWP  G       + +N + Y  NLI H++   GTP  P ++++TY+FA++DE+ K
Sbjct:  198 IIGFLSSIRSPLLANIYPYFTYAYNPRDISLPYALFTSPSVVVWDGQRG--YKNLFDATLDALYSALERASGGSLEVVVSESGWPSAG---AFAATFDNGRTYLSNLIQHVK--GGTPKRPNRAIETYLFAMFDENKK 328          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.971e-20
Identity = 54/137 (39.42%), Postives = 82/137 (59.85%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++A+   G   V IVV+E+GWP  G     G + +NA  Y  NLI H +   G+P  PG  ++TYIFA++DE+ K
Sbjct:  161 IVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNAVVQDGSR-QYRNLFDAMLDSVYAAMERTGGGSVGIVVSESGWPSAG---AFGATQDNAATYLRNLIQHAKE--GSPRKPG-PIETYIFAMFDENNK 290          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.330e-19
Identity = 58/142 (40.85%), Postives = 79/142 (55.63%), Query Frame = 3
Query:   21 QFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNA-MGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            Q+L+  G+P   N YP+F+Y  +P    L + LF      V  G+   Y N+FDA VD   SAL    G  +V +VV+E+GWP  G       +  NA+ YN NLI H+    GTP  PG  ++TYIFA+++ED K G  SE
Sbjct:  182 QYLQSTGAPLLSNVYPYFSYVGNPAQIDLKYALFTSPGTVVQDGSN-AYQNLFDALVDTFVSALEENAGAGNVPVVVSESGWPSAGGD---AATAANAQTYNQNLINHVGQ--GTPKRPG-PIETYIFAMFNEDQKTGAESE 316          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E133_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosum GN=GLUB3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.330e-19
Identity = 54/137 (39.42%), Postives = 82/137 (59.85%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++A+   G   V IVV+E+GWP  G     G + +NA  Y  NLI H +   G+P  PG  ++TYIFA++DE+ K
Sbjct:  152 IVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSR-QYRNLFDAMLDSVYAAMERTGGGSVGIVVSESGWPSAG---AFGATQDNAATYLRNLIQHAKE--GSPRKPG-PIETYIFAMFDENNK 281          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.737e-19
Identity = 54/137 (39.42%), Postives = 82/137 (59.85%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++AL   G   V IVV+E+GWP  G     G + +NA  Y  NLI H +   G+P  P + ++TYIFA++DE+ K
Sbjct:  195 IVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLFTAPNVVVQDGSR-QYRNLFDAMLDSVYAALERSGGASVGIVVSESGWPSAG---AFGATYDNAATYLKNLIQHAKE--GSPRKP-RPIETYIFAMFDENNK 324          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.269e-19
Identity = 54/137 (39.42%), Postives = 81/137 (59.12%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            I+ FL+D  +P  +N YP+F+Y  +P   +L + LF      V  G+  +Y N+FDA +D+V++A+   G   V IVV+E GWP  G     G + +NA  Y  NLI H +   G+P  PG  ++TYIFA++DE+ K
Sbjct:  187 IVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSR-QYRNLFDAMLDSVYAAMERTGGGSVGIVVSECGWPSAG---AFGATQDNAATYLRNLIQHAKE--GSPRKPG-PIETYIFAMFDENNK 316          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.471e-18
Identity = 54/141 (38.30%), Postives = 77/141 (54.61%), Query Frame = 3
Query:    6 MRGILQFLKDHGSPFTINPYPFFAYQSDPR-PETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            M  I++FL D+G+PFTIN YPF +  +DP  P   AF       G   +  G  Y N+ DA  D +  +L   GF ++ I+V E GWP  GD N    ++  A+ YN   +   ++  GTP+ PG ++D Y+F L DED K
Sbjct:  187 MLNIVKFLSDNGAPFTINIYPFISLYNDPNFPVEFAFF---DGTGTPINDNGRIYDNVLDANYDTLVWSLQKNGFGNLTIIVGEVGWPTDGDKN---ANLMYARRYNQGFMNRQKANKGTPMRPG-AMDAYLFGLIDEDAK 320          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13B_PEA (Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.589e-18
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 3
Query:   39 GSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            G+P  +N YP+F++  +PR  +L + LF      V  G    Y N+FDA +D+VH+AL+  G   V +VV+E+GWP  G       S +NA+ Y  NLI H+    GTP  P  + + Y+FA++DE+ K
Sbjct:  202 GAPLLVNVYPYFSHIGNPRDISLPYALFTSPGVMVQDGPN-GYQNLFDAMLDSVHAALDNTGIGWVNVVVSESGWPSDGGS---ATSYDNARIYLDNLIRHVGK--GTPRRPW-ATEAYLFAMFDENQK 323          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.124e-17
Identity = 58/147 (39.46%), Postives = 78/147 (53.06%), Query Frame = 3
Query:    6 MRGILQFLKDHGSPFTINPYPFFA-YQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK---PGP 434
            M  I+ FL  + +P TIN YPF + Y +D  P   AF     +     +  GI Y N+FDA  D + S+L A+G  D+ I+V E GWP  GD +    S    + YNG L+  L +  GTPL P   ++ Y+F L DED K   PGP
Sbjct:  186 MTQIVDFLGKNNAPITINIYPFLSLYGNDDFPLNYAFF----DGAEPINDNGIDYTNVFDANFDTLVSSLKAVGHGDMPIIVGEVGWPTEGDKHANAGSA--YRFYNG-LLPRLGTNKGTPLRP-TYIEVYLFGLLDEDAKSIAPGP 324          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.070e-17
Identity = 50/140 (35.71%), Postives = 78/140 (55.71%), Query Frame = 3
Query:    6 MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            M  ++QFL    +P   N YP+ A+  +P    + + LF  +   V  G    Y N+FD  VDA ++A+   G   V++VV+E+GWP  G       +  NA+ YN +LI H+    GTP  PG +++TYIFA+++E+ K
Sbjct:  157 MGPVVQFLARTNAPLMANIYPYLAWAYNPSAMDMGYALFNASGTVVRDGA-YGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWPSGGG---TAATPANARFYNQHLINHVG--RGTPRHPG-AIETYIFAMFNENQK 289          
The following BLAST results are available for this feature:
BLAST of CF503936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E13B_HEVBR5.971e-2038.41Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E131_SOLTU5.971e-2039.42Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]
E13B_MAIZE1.330e-1940.85Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E133_SOLTU1.330e-1939.42Glucan endo-1,3-beta-glucosidase, basic isoform 3 ... [more]
E13B_NICPL1.737e-1939.42Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E132_SOLTU2.269e-1939.42Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]
E135_ARATH1.471e-1838.30Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]
E13B_PEA5.589e-1838.76Glucan endo-1,3-beta-glucosidase OS=Pisum sativum ... [more]
E138_ARATH2.124e-1739.46Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]
GUB2_HORVU8.070e-1735.71Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-424 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503936 ID=CF503936; Name=CF503936; organism=Citrus sinensis; type=EST; length=444bp
ACACTATGAGAGGGATTTTGCAGTTTCTTAAAGACCACGGCTCCCCTTTT
ACCATCAACCCGTACCCGTTTTTCGCTTATCAAAGTGACCCGAGACCCGA
GACTCTTGCCTTCTGTTTGTTTCAACCCAACGCGGGACGAGTTGACTCCG
GGACCGGGATCAAATACATGAACATGTTCGACGCCCAGGTTGATGCTGTA
CATTCAGCCTTGAATGCAATGGGGTTCAAGGATGTCGAGATTGTGGTTGC
AGAGACAGGGTGGCCTTACCGCGGAGACCCGAATGAGGTTGGACCTAGTG
TTGAGAATGCCAAGGCCTATAACGGGAACTTGATTGCTCACCTTAGATCA
ATGGCTGGAACTCCATTGATGCCTGGAAAATCTGTGGATACATATATTTT
TGCTCTCTATGATGAGGACTTGAAGCCTGGCCCTACCTCTGAAC
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