CF503937

Overview
NameCF503937
Unique NameCF503937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503937_ssr1 microsatellite CF503937_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10777 contig Csv1_Contig10777:1..393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19_GILMI (40S ribosomal protein S19 OS=Gillichthys mirabilis GN=rps19 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.658e-27
Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TVKDV+  EFV+A +A LK+SGK+++P W D+VK  + KELAP D +W+Y+RAAS  R +YLR G GVGS  +IYGG +RNG  P H+ + S  +AR +L
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGRHKELAPSDENWFYIRAASTVRHLYLRGGAGVGSMTKIYGGRQRNGVCPAHYSEGSKNVARKVL 104          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19_EMENI (40S ribosomal protein S19 OS=Emericella nidulans GN=rps19 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.152e-26
Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TV+DV   +F+ AY+A LKR GK+ +P W D VKT+   EL P D DWYYVRAA++AR IYLR+ +GVG  R+++G +K  GSRP H   +SGA+ R +L
Sbjct:    5 TVRDVDAQKFIVAYAAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWYYVRAAAVARHIYLRKTVGVGRLRKVHGSTKNRGSRPAHHVDASGAVDRKVL 104          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19G_ASCSU (40S ribosomal protein S19G OS=Ascaris suum GN=RPS19G PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.395e-25
Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 1
Query:   79 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            M  A +VKDV  HE V+  +  LK+SGK+++P W+D+ K    KELAP + DWYYVR AS+AR++Y+R   GV + R +YGGSKR G  P HF K+SG++ R  L
Sbjct:    1 MVKATSVKDVDQHEIVQHIAKFLKKSGKVKVPEWSDVTKMGISKELAPLNSDWYYVRTASIARRLYVRSPTGVDALRLVYGGSKRRGVVPNHFAKASGSVIRKAL 105          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19_PAGMA (40S ribosomal protein S19 OS=Pagrus major GN=rps19 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.379e-25
Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TVKDV+  EFV+A +A LK+SGK+++P W D+VK  + KELAP D +W+Y+R+AS  R +YLR G GVGS  +IYG  +RNG  P H+   S  +AR +L
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGKHKELAPSDENWFYIRSASTVRHLYLRGGAGVGSMTKIYGSRQRNGVCPAHYSVGSKNVARKVL 104          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19_ENTHI (40S ribosomal protein S19 OS=Entamoeba histolytica GN=RPS19 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   97 VKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            +KDV   +F+KAY+ HLK+SGK+E+P W D VKT   KELAP +PDW Y+RAA++ARK+YL  G+GV + RR YG        P H    SG + R+IL
Sbjct:    7 IKDVVAIDFIKAYAEHLKKSGKLEIPEWVDTVKTGMCKELAPLNPDWIYIRAAAIARKVYLNNGIGVMALRRAYGDQYNKHYYPSHRTLGSGKVNRYIL 105          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19_CAEEL (40S ribosomal protein S19 OS=Caenorhabditis elegans GN=rps-19 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.181e-24
Identity = 51/102 (50.00%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   79 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIAR 384
            M  A ++KDV  HE  K+ +  LK+SGK+++P W+D+VK    KELAP DPDW+Y RAAS+AR +Y R   G+G+F+++YGG+KR G  P HF  S+G   R
Sbjct:    1 MTRATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFRPA-GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLR 101          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19B_YEAST (40S ribosomal protein S19-B OS=Saccharomyces cerevisiae GN=RPS19B PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.063e-21
Identity = 46/101 (45.54%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPD-WYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            +V+DV+  +F+ AY++ L+R GK+E+P + DIVKT+   E+ P D + W+Y RAAS+AR IY+R+ +GVG   ++YGG+K  G RP     +SG+I R +L
Sbjct:    5 SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVL 105          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19B_DROME (40S ribosomal protein S19b OS=Drosophila melanogaster GN=RpS19b PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.063e-21
Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TVK++  H   K  +A LK+SGK+ +P     +KT +FKE AP D DW+Y R AS+ R +YLR   GVG+F ++Y G KRNG RP   C+SS    R  L
Sbjct:    5 TVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASIMRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKAL 104          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19A_YEAST (40S ribosomal protein S19-A OS=Saccharomyces cerevisiae GN=RPS19A PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.063e-21
Identity = 46/101 (45.54%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPD-WYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            +V+DV+  +F+ AY++ L+R GK+E+P + DIVKT+   E+ P D + W+Y RAAS+AR IY+R+ +GVG   ++YGG+K  G RP     +SG+I R +L
Sbjct:    5 SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVL 105          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19E_METTH (30S ribosomal protein S19e OS=Methanobacterium thermoautotrophicum GN=rps19e PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.804e-18
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TV DV     +   +  LK   K++ P W + VKT   KE  P +PDW+YVRAA++ R++Y+   +GV S R  YGG K  GSRP  F + SGAI R  L
Sbjct:    3 TVYDVPADLLINRVAEELKNDSKVKSPEWVNFVKTGVHKERRPENPDWWYVRAAALLRRVYIDGPVGVNSLRTHYGGKKDRGSRPEKFRRGSGAIIRRAL 102          
The following BLAST results are available for this feature:
BLAST of CF503937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RS19_GILMI9.658e-2754.0040S ribosomal protein S19 OS=Gillichthys mirabilis... [more]
RS19_EMENI2.152e-2653.0040S ribosomal protein S19 OS=Emericella nidulans G... [more]
RS19G_ASCSU1.395e-2550.4840S ribosomal protein S19G OS=Ascaris suum GN=RPS1... [more]
RS19_PAGMA2.379e-2552.0040S ribosomal protein S19 OS=Pagrus major GN=rps19... [more]
RS19_ENTHI9.040e-2551.5240S ribosomal protein S19 OS=Entamoeba histolytica... [more]
RS19_CAEEL1.181e-2450.0040S ribosomal protein S19 OS=Caenorhabditis elegan... [more]
RS19B_YEAST6.063e-2145.5440S ribosomal protein S19-B OS=Saccharomyces cerev... [more]
RS19B_DROME6.063e-2147.0040S ribosomal protein S19b OS=Drosophila melanogas... [more]
RS19A_YEAST6.063e-2145.5440S ribosomal protein S19-A OS=Saccharomyces cerev... [more]
RS19E_METTH4.804e-1844.0030S ribosomal protein S19e OS=Methanobacterium the... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-425 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503937 ID=CF503937; Name=CF503937; organism=Citrus sinensis; type=EST; length=394bp
GAGAGAGAGAGAGAGCGCAATTCCACCACCTTCTTGCAAAAGCGAAGCTT
TGAGTCGCTCTCCTGCTCTGTTGTGACCATGGCTACAGCTAGGACTGTCA
AGGACGTGTCTCCTCATGAGTTCGTGAAGGCTTACTCTGCTCATCTCAAG
CGATCTGGCAAGATGGAACTTCCCCCATGGACTGACATAGTCAAGACTGC
TCAGTTCAAGGAGCTTGCTCCCTACGACCCTGACTGGTACTATGTCAGAG
CTGCCTCCATGGCAAGGAAAATCTACTTGAGGCAAGGGCTTGGTGTGGGT
TCTTTCAGGAGGATTTATGGTGGAAGTAAGAGGAATGGAAGCCGTCCACC
TCACTTCTGCAAAAGCAGTGGTGCTATTGCTCGCCACATTCTTC
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