CF503945

Overview
NameCF503945
Unique NameCF503945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig715 contig Csv1_Contig715:775..1397. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503945 vs. ExPASy Swiss-Prot
Match: BRAF1_COTJA (B-Raf proto-oncogene serine/threonine-protein kinase OS=Coturnix coturnix japonica GN=BRAF PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.595e-20
Identity = 58/142 (40.85%), Postives = 83/142 (58.45%), Query Frame = 1
Query:  196 DDVAECEIPWEEITLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDFFGESLEEFRSEVLIMKRVRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLLHRPNNQXXXXXXXXXXXXXXXGMNYLHNCTPVIVHRDLKSPNL 621
            D   + EIP  +IT+G+RIG GS+G VY+G WHG +VAVK         + L+ F++EV ++++ RH N++LFMG  T+ P L+IVT++    SLY  LH    +               GM+YLH     I+HRDLKS N+
Sbjct:  485 DSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH--AKSIIHRDLKSNNI 622          
BLAST of CF503945 vs. ExPASy Swiss-Prot
Match: BRAF1_CHICK (B-Raf proto-oncogene serine/threonine-protein kinase OS=Gallus gallus GN=BRAF PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.595e-20
Identity = 58/142 (40.85%), Postives = 83/142 (58.45%), Query Frame = 1
Query:  196 DDVAECEIPWEEITLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDFFGESLEEFRSEVLIMKRVRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLLHRPNNQXXXXXXXXXXXXXXXGMNYLHNCTPVIVHRDLKSPNL 621
            D   + EIP  +IT+G+RIG GS+G VY+G WHG +VAVK         + L+ F++EV ++++ RH N++LFMG  T+ P L+IVT++    SLY  LH    +               GM+YLH     I+HRDLKS N+
Sbjct:  485 DSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH--AKSIIHRDLKSNNI 622          
BLAST of CF503945 vs. ExPASy Swiss-Prot
Match: RAF1_PONAB (RAF proto-oncogene serine/threonine-protein kinase OS=Pongo abelii GN=RAF1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.639e-20
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  214 EIPWEEITLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDFFGESLEEFRSEVLIMKRVRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLLHRPNNQXXXXXXXXXXXXXXXGMNYLHNCTPVIVHRDLKSPNL 621
            EI   E+ L  RIG GS+G VY+G WHG +VAVK     D   E  + FR+EV ++++ RH N++LFMG +T+  NL+IVT++    SLY+ LH    +               GM+YLH     I+HRD+KS N+
Sbjct:  343 EIEASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH--AKNIIHRDMKSNNI 474          
BLAST of CF503945 vs. ExPASy Swiss-Prot
Match: RAF1_HUMAN (RAF proto-oncogene serine/threonine-protein kinase OS=Homo sapiens GN=RAF1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.639e-20
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  214 EIPWEEITLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDFFGESLEEFRSEVLIMKRVRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLLHRPNNQXXXXXXXXXXXXXXXGMNYLHNCTPVIVHRDLKSPNL 621
            EI   E+ L  RIG GS+G VY+G WHG +VAVK     D   E  + FR+EV ++++ RH N++LFMG +T+  NL+IVT++    SLY+ LH    +               GM+YLH     I+HRD+KS N+
Sbjct:  343 EIEASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH--AKNIIHRDMKSNNI 474          
BLAST of CF503945 vs. ExPASy Swiss-Prot
Match: RAF1_CHICK (RAF proto-oncogene serine/threonine-protein kinase OS=Gallus gallus GN=RAF1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.639e-20
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  214 EIPWEEITLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDFFGESLEEFRSEVLIMKRVRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLLHRPNNQXXXXXXXXXXXXXXXGMNYLHNCTPVIVHRDLKSPNL 621
            EI   E+ L  RIG GS+G VY+G WHG +VAVK     D   E  + FR+EV ++++ RH N++LFMG +T+  NL+IVT++    SLY+ LH    +               GM+YLH     I+HRD+KS N+
Sbjct:  343 EIEASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH--AKNIIHRDMKSNNI 474          
BLAST of CF503945 vs. ExPASy Swiss-Prot
Match: RAF1_BOVIN (RAF proto-oncogene serine/threonine-protein kinase OS=Bos taurus GN=RAF1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.639e-20
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  214 EIPWEEITLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDFFGESLEEFRSEVLIMKRVRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLLHRPNNQXXXXXXXXXXXXXXXGMNYLHNCTPVIVHRDLKSPNL 621
            EI   E+ L  RIG GS+G VY+G WHG +VAVK     D   E  + FR+EV ++++ RH N++LFMG +T+  NL+IVT++    SLY+ LH    +               GM+YLH     I+HRD+KS N+
Sbjct:  343 EIEASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH--AKNIIHRDMKSNNI 474          
BLAST of CF503945 vs. ExPASy Swiss-Prot
Match: MIL_AVIMH (Serine/threonine-protein kinase-transforming protein mil OS=Avian retrovirus MH2 GN=V-MIL PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.639e-20
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  214 EIPWEEITLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDFFGESLEEFRSEVLIMKRVRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLLHRPNNQXXXXXXXXXXXXXXXGMNYLHNCTPVIVHRDLKSPNL 621
            EI   E+ L  RIG GS+G VY+G WHG +VAVK     D   E  + FR+EV ++++ RH N++LFMG +T+  NL+IVT++    SLY+ LH    +               GM+YLH     I+HRD+KS N+
Sbjct:   76 EIEASEVLLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH--AKNIIHRDMKSNNI 207          
BLAST of CF503945 vs. ExPASy Swiss-Prot
Match: RAF_MSV36 (Serine/threonine-protein kinase-transforming protein raf OS=Murine sarcoma virus 3611 GN=V-RAF PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.059e-20
Identity = 55/131 (41.98%), Postives = 78/131 (59.54%), Query Frame = 1
Query:  229 EITLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDFFGESLEEFRSEVLIMKRVRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLLHRPNNQXXXXXXXXXXXXXXXGMNYLHNCTPVIVHRDLKSPNL 621
            E+ L  RIG GS+G VY+G WHG +VAVK     D   E L+ FR+EV ++++ RH N++LFMG +T+  NL+IVT++    SLY+ LH    +               GM+YLH     I+HRD+KS N+
Sbjct:   23 EVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH--AKNIIHRDMKSNNI 149          
BLAST of CF503945 vs. ExPASy Swiss-Prot
Match: RAF1_XENLA (RAF proto-oncogene serine/threonine-protein kinase OS=Xenopus laevis GN=raf1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.059e-20
Identity = 57/136 (41.91%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  214 EIPWEEITLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDFFGESLEEFRSEVLIMKRVRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLLHRPNNQXXXXXXXXXXXXXXXGMNYLHNCTPVIVHRDLKSPNL 621
            EI   E+ L  RIG GS+G VY+G WHG +VAVK     D   E L+ FR+EV ++++ RH N++LFMG +T+  NL+IVT++    SLY  LH  + +               GM+YLH     I+HRD+KS N+
Sbjct:  334 EIIASEVMLSSRIGSGSFGTVYKGKWHG-DVAVKILKVTDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEGSSLYYHLHVLDTKFQMFQLIDIARQTAQGMDYLH--AKNIIHRDMKSNNI 465          
BLAST of CF503945 vs. ExPASy Swiss-Prot
Match: ARAF_PIG (A-Raf proto-oncogene serine/threonine-protein kinase OS=Sus scrofa GN=ARAF PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.913e-20
Identity = 66/193 (34.20%), Postives = 95/193 (49.22%), Query Frame = 1
Query:   46 RSDGDADSAGYEPRDSGSGGREHNYLGANSEG-ERVXXXXXXXXXXXXXVGDDVAECEIPWEEITLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDFFGESLEEFRSEVLIMKRVRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLLHRPNNQXXXXXXXXXXXXXXXGMNYLHNCTPVIVHRDLKSPNL 621
            R  GD    G     S S GR+  +  + SE  ER                D     E+P  E+ L +RIG GS+G V+RG WHG +VAVK         E  + F++E+ ++++ RH N++LFMG +TR P  +I+T++    SLY  LH  + +               GM+YLH     I+HRDLKS N+
Sbjct:  247 RGGGDGAPRGSPSPASVSSGRKSPHSKSPSEQRERKSLADDKKKVKNLGYRDSGYYWEVPPSEVQLLKRIGTGSFGTVFRGRWHG-DVAVKVLKVAQPTAEQAQAFKNEMQVLRKTRHVNILLFMGFMTR-PGFAIITQWCEGSSLYHHLHVADTRFDMVQLIDVARQTAQGMDYLH--AKNIIHRDLKSNNI 435          
The following BLAST results are available for this feature:
BLAST of CF503945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
BRAF1_COTJA1.595e-2040.85B-Raf proto-oncogene serine/threonine-protein kina... [more]
BRAF1_CHICK1.595e-2040.85B-Raf proto-oncogene serine/threonine-protein kina... [more]
RAF1_PONAB4.639e-2041.18RAF proto-oncogene serine/threonine-protein kinase... [more]
RAF1_HUMAN4.639e-2041.18RAF proto-oncogene serine/threonine-protein kinase... [more]
RAF1_CHICK4.639e-2041.18RAF proto-oncogene serine/threonine-protein kinase... [more]
RAF1_BOVIN4.639e-2041.18RAF proto-oncogene serine/threonine-protein kinase... [more]
MIL_AVIMH4.639e-2041.18Serine/threonine-protein kinase-transforming prote... [more]
RAF_MSV366.059e-2041.98Serine/threonine-protein kinase-transforming prote... [more]
RAF1_XENLA6.059e-2041.91RAF proto-oncogene serine/threonine-protein kinase... [more]
ARAF_PIG7.913e-2034.20A-Raf proto-oncogene serine/threonine-protein kina... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-433 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503945 ID=CF503945; Name=CF503945; organism=Citrus sinensis; type=EST; length=623bp
GTAGCGACAACTGCAGCTGTTGGTAAGCAGTATGAGCTGAGTATTCGGAG
TGATGGAGATGCAGACTCTGCTGGTTATGAACCTCGTGATAGTGGTAGTG
GAGGCCGGGAACATAATTATTTGGGAGCTAATTCAGAAGGTGAGAGAGTA
TCAGATCGATCGGCCAGTAATGATAGCTCAAAATCTGATGTTGGAGATGA
TGTTGCGGAGTGTGAGATTCCATGGGAAGAAATCACCTTGGGTGAGCGTA
TCGGACTTGGATCTTATGGAGAGGTCTATCGTGGGGACTGGCATGGAACT
GAAGTTGCTGTGAAGAGGTTCCTAGACCAAGACTTTTTTGGTGAATCACT
AGAAGAATTCAGAAGTGAGGTGCTAATCATGAAAAGGGTTAGGCATCCCA
ATGTTGTTCTCTTTATGGGAGCTGTAACTCGTCCTCCGAATCTTTCAATT
GTTACAGAATTTCTTCCTCGAGGTAGTTTGTATAGGTTACTTCATCGGCC
TAACAATCAACTAGATGAGAGAAGGCGTTTGAGGATGGCCCTTGATGCTG
CTCGGGGAATGAATTATTTACACAATTGTACCCCAGTAATTGTACATCGT
GATCTGAAGTCCCCAAATCTTCT
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