CF503956

Overview
NameCF503956
Unique NameCF503956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK7_RAT (Cell division protein kinase 7 (Fragment) OS=Rattus norvegicus GN=Cdk7 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 69/160 (43.12%), Postives = 91/160 (56.88%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYW-KKSKLPHATLFK--PQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKP 472
            ++  GVLKLADFGLA  S        T +VVT WYR PELL GA  YG  VD+W+VGC+ AELL+  P L G ++++QL +IF+  G+P ++ W     LP    FK  P  P    L+  F       + LI+ L    P  R TAS AL ++YFS +P
Sbjct:  137 LDENGVLKLADFGLAK-SFGSPNWAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIP----LQHIFIAAGDDLLELIQGLFLFNPCTRITASQALRTKYFSNRP 291          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK3_HUMAN (Cell division protein kinase 3 OS=Homo sapiens GN=CDK3 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 65/158 (41.14%), Postives = 93/158 (58.86%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWK-KSKLPHATLFKPQQP--YDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFST 466
            +N  G +KLADFGLA       R   T  VVTLWYR PE+LLG+  Y  +VD+WS+GC+FAE++  K +  G +E++QL +IF++ G+P +D W   ++LP    +K   P      L E   +L     +L+  LL  +P +R TA  ALA  YFS+
Sbjct:  135 INELGAIKLADFGLARAFGVPLRT-YTHEVVTLWYRAPEILLGSKFYTTAVDIWSIGCIFAEMVTRKALFPGDSEIDQLFRIFRMLGTPSEDTWPGVTQLPD---YKGSFPKWTRKGLEEIVPNLEPEGRDLLMQLLQYDPSQRITAKTALAHPYFSS 288          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDC21_MEDSA (Cell division control protein 2 homolog 1 (Fragment) OS=Medicago sativa GN=CDC2A PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 62/148 (41.89%), Postives = 89/148 (60.14%), Query Frame = 2
Query:   20 LKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWK-KSKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYF 460
            LKLADFGLA       R   T  VVTLWYR PE+LLG+  Y   VD+WSVGC+FAE+   +P+  G +E+++L KIF++ G+P +D W   + LP      P+ P    L     +L    ++L+ ++L ++P KR TA +A+  EYF
Sbjct:  139 LKLADFGLARAFGIPVRT-FTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMANRRPLSPGDSEIDELFKIFRILGTPNEDTWPGVTSLPDFKSTFPRWP-SKDLATVVPNLEPAGLDLLNSMLCLDPTKRITARSAVEHEYF 284          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CKB21_ARATH (Cyclin-dependent kinase B2-1 OS=Arabidopsis thaliana GN=CDKB2-1 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/155 (41.29%), Postives = 89/155 (57.42%), Query Frame = 2
Query:   20 LKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKSKLPHATLFKPQQPY----DSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKP 472
            LK+AD GLA  + T   +  T  ++TLWYR PE+LLGAT Y  +VD+WSVGC+FAEL+  + I QG +E++QL  IFKL G+P ++ W     P  +  K    Y     S+L     +L    V+L+  +L  EP KR +A  A+   YF   P
Sbjct:  160 LKIADLGLAR-AFTLPMKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELVTNQAIFQGDSELQQLLHIFKLFGTPNEEMW-----PGVSTLKNWHEYPQWKPSTLSSAVPNLDEAGVDLLSKMLQYEPAKRISAKMAMEHPYFDDLP 308          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDKD1_ARATH (Cyclin-dependent kinase D-1 OS=Arabidopsis thaliana GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 69/181 (38.12%), Postives = 95/181 (52.49%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKSKLPHATLFKPQQPYD----SSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYACDLSSLPIYPPSKEIDAK 532
            +   G LKLADFGLA    +  R+  T +V   WYR PELL GA  Y  +VD+W+ GC+FAELL+ +P LQG ++++QL KIF   G+P  D W     P          Y      SLR     +   A++L+  + + +P  R +   AL   YF++ P   D   LP  P SK+ DAK
Sbjct:  141 IGPNGQLKLADFGLARIFGSPGRK-FTHQVFARWYRAPELLFGAKQYDGAVDVWAAGCIFAELLLRRPFLQGNSDIDQLSKIFAAFGTPKADQW-----PDMICLPDYVEYQFVPAPSLRSLLPTVSEDALDLLSKMFTYDPKSRISIQQALKHRYFTSAPSPTDPLKLP-RPVSKQ-DAK 313          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDKA1_ORYSJ (Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 66/149 (44.30%), Postives = 87/149 (58.39%), Query Frame = 2
Query:   20 LKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWK-KSKLP-HATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYF 460
            LKLADFGLA       R   T  VVTLWYR PE+LLG+  Y   VD+WSVGC+FAE++  KP+  G +E+++L KIF++ G+P +  W   S LP + + F   Q  D  L      L    ++L+  +L  EP KR TA  AL  EYF
Sbjct:  142 LKLADFGLARAFGIPVRT-FTHEVVTLWYRAPEILLGSRQYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRVLGTPNEQSWPGVSSLPDYKSAFPKWQAQD--LATIVPTLDPAGLDLLSKMLRYEPNKRITARQALEHEYF 287          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDC2_ORYLU (Cell division control protein 2 homolog OS=Oryzias luzonensis GN=cdc2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 68/166 (40.96%), Postives = 92/166 (55.42%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKK-SKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYF-----STKPYAC 481
            ++N+GV+KLADFGLA       R   T  VVTLWYR PE+LLG+  Y   VD+WS G +FAEL   KP+  G +E++QL +IF+  G+P +D W     LP      P+     SL    K+L    ++L+  +L   P KR +A  A+   YF     ST P AC
Sbjct:  136 IDNKGVIKLADFGLARAFGVPVRV-YTHEVVTLWYRAPEVLLGSPRYSTPVDVWSTGTIFAELATKKPLFHGDSEIDQLFRIFRTLGTPNNDVWPDVESLPDYKNTFPKWK-GGSLSSMVKNLDKNGLDLLAKMLIYNPPKRISAREAMTHPYFDDLDKSTLPAAC 299          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDC2A_ANTMA (Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 62/148 (41.89%), Postives = 90/148 (60.81%), Query Frame = 2
Query:   20 LKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWK-KSKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYF 460
            LKLADFGLA       R   T  VVTLWYR PE+LLG+  Y   VD+WSVGC+FAE++  +P+  G +E+++L KIF++ G+P ++ W   + LP      P+ P    L     +L  + ++L++ +L ++P KR TA  AL  EYF
Sbjct:  142 LKLADFGLARAFGIPVRT-FTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVMGTPNEETWPGVTSLPDFKSAFPKWP-AKELAAVVPNLDASGLDLLDKMLRLDPSKRITARNALQHEYF 287          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDC28_CANAL (Cell division control protein 28 OS=Candida albicans GN=CDC28 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 61/155 (39.35%), Postives = 89/155 (57.42%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKK-SKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFS 463
            ++ EG LKLADFGLA       R   T  VVTLWYR PE+LLG   Y   VD+WSVGC+FAE+   KP+  G +E++++ +IF++ G+P ++ W   + LP      PQ      L E    L    ++L++ +L  +P +R +A  AL   YF+
Sbjct:  141 IDKEGNLKLADFGLARAFGVPLRA-YTHEVVTLWYRAPEILLGGKQYSTGVDMWSVGCIFAEMCNRKPLFPGDSEIDEIFRIFRILGTPNEEIWPDVNYLPDFKSSFPQWK-KKPLSEAVPSLDANGIDLLDQMLVYDPSRRISAKRALIHPYFN 293          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK7_CARAU (Cell division protein kinase 7 OS=Carassius auratus GN=cdk7 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.075e-24
Identity = 77/193 (39.90%), Postives = 103/193 (53.37%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWK-KSKLPHATLFK--PQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYACDLSSLPIYPPSKEIDAKHRED----ARRKR 559
            ++  GVLKLADFGLA    + +R   T +VVT WYR PELL GA  YG  VD+W+VG + AELL+  P L G ++++QL  IF+  G+P ++ W   S LP    FK  P  P +        DL    + L++ L +  P  R TAS AL   YFS +P       LP  P S     K +E+     +RKR
Sbjct:  144 LDENGVLKLADFGLAKAFGSPNRV-YTHQVVTRWYRAPELLFGARMYGVGVDMWAVGSILAELLLRVPFLAGDSDLDQLTGIFEALGTPTEETWPGMSNLPDYVSFKLFPGTPLEHIFSAAGDDL----LELLKGLFTFNPCTRTTASQALKMRYFSIRPGPTPGPQLP-RPNSSTEALKEKENLLIGIKRKR 330          
The following BLAST results are available for this feature:
BLAST of CF503956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK7_RAT6.300e-2543.13Cell division protein kinase 7 (Fragment) OS=Rattu... [more]
CDK3_HUMAN6.300e-2541.14Cell division protein kinase 3 OS=Homo sapiens GN=... [more]
CDC21_MEDSA6.300e-2541.89Cell division control protein 2 homolog 1 (Fragmen... [more]
CKB21_ARATH8.228e-2541.29Cyclin-dependent kinase B2-1 OS=Arabidopsis thalia... [more]
CDKD1_ARATH8.228e-2538.12Cyclin-dependent kinase D-1 OS=Arabidopsis thalian... [more]
CDKA1_ORYSJ8.228e-2544.30Cyclin-dependent kinase A-1 OS=Oryza sativa subsp.... [more]
CDC2_ORYLU8.228e-2540.96Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2A_ANTMA8.228e-2541.89Cell division control protein 2 homolog A OS=Antir... [more]
CDC28_CANAL8.228e-2539.35Cell division control protein 28 OS=Candida albica... [more]
CDK7_CARAU1.075e-2439.90Cell division protein kinase 7 OS=Carassius auratu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-444 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503956 ID=CF503956; Name=CF503956; organism=Citrus sinensis; type=EST; length=721bp
GGTGAACAATGAAGGAGTCCTCAAGTTGGCCGACTTTGGATTGGCAAACT
TCTCTAATACTGGACATCGACAACCCTTAACCAGTCGTGTTGTGACTTTA
TGGTATCGTCCACCCGAACTTTTGCTTGGCGCCACAGATTATGGACCGTC
TGTGGATCTTTGGAGTGTTGGCTGTGTGTTTGCAGAACTTCTCATAGGGA
AACCCATCCTTCAAGGGAGAACGGAGGTAGAACAACTACACAAAATTTTC
AAGCTTTGTGGGTCCCCACCTGATGATTACTGGAAAAAATCAAAACTTCC
TCATGCTACTCTGTTCAAACCACAACAACCTTATGACAGTAGTCTTCGAG
AAACATTCAAAGATTTGCCCACAACTGCCGTGAACCTGATAGAAACTTTA
CTTTCAGTAGAGCCATACAAGCGTGCAACTGCCTCTGCAGCCCTAGCATC
TGAGTATTTCTCAACAAAGCCTTATGCTTGCGATCTGTCAAGTTTGCCAA
TATATCCACCAAGCAAAGAGATTGATGCAAAACATCGTGAAGATGCACGC
AGGAAAAGGGTGGTGGAAGAGTTCGTGGAGCTGAGACAAGAAAGACTACA
CGAAAATCCCATGGAATGAGTAAATTGGCACCCGTAGAGGATGTGGCAGT
GCGGACTCAGTTTGCTAAAAAAATTAACGGACATAGTTGCATATTTTGAA
AGATGATGAGTTGTCTGGTAG
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