CF503956

Overview
NameCF503956
Unique NameCF503956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDC28_YEAST (Cell division control protein 28 OS=Saccharomyces cerevisiae GN=CDC28 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.127e-24
Identity = 60/155 (38.71%), Postives = 85/155 (54.84%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKSKLPHATLFKPQQPY--DSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYF 460
            +N +G LKL DFGLA       R   T  +VTLWYR PE+LLG   Y   VD WS+GC+FAE+   KPI  G +E++Q+ KIF++ G+P +  W    + +   FKP  P      L +    L    ++L++ LL+ +P  R +A  A    YF
Sbjct:  144 INKDGNLKLGDFGLARAFGVPLRA-YTHEIVTLWYRAPEVLLGGKQYSTGVDTWSIGCIFAEMCNRKPIFSGDSEIDQIFKIFRVLGTPNEAIW--PDIVYLPDFKPSFPQWRRKDLSQVVPSLDPRGIDLLDKLLAYDPINRISARRAAIHPYF 295          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDKF2_ORYSJ (Putative cyclin-dependent kinase F-2 OS=Oryza sativa subsp. japonica GN=CDKF-2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.083e-24
Identity = 64/157 (40.76%), Postives = 91/157 (57.96%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKK-SKLPHA--TLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFS 463
            V   G LK+ DFG++  +  G   P TS VVTLWYR PEL+LG+ +Y   VD WS+GC+ AELL G P+  GR+E++QL+++F   G      W   ++LP A   L    +P  S LRE F  L     +++  LL+  P +R TA+ AL   +F+
Sbjct:  142 VGPRGDLKICDFGMSRVTAAG-APPYTSPVVTLWYRAPELILGSQEYDSLVDTWSLGCIMAELLAGAPLFPGRSEMDQLNRVFDTVGMQDMKSWPGFARLPRAESALCSRARP-PSRLREMFPKLSAAGFDVLSGLLACRPDRRLTAADALRCAWFT 296          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK5_DICDI (Cell division protein kinase 5 homolog OS=Dictyostelium discoideum GN=cdk5 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.083e-24
Identity = 60/154 (38.96%), Postives = 87/154 (56.49%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKK-SKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYF 460
            +N +G LKLADFGLA       R   +  VVTLWYR P++L+G+  Y   +D+WS GC+FAE+  G+P+  G    +QL +IFK+ G+P ++ W   ++LP      P  P    L      L    +NL+  +L  +P +R TA+AAL   YF
Sbjct:  134 INRKGELKLADFGLARAFGIPVRT-YSHEVVTLWYRAPDVLMGSRKYSTPIDIWSAGCIFAEMASGRPLFPGSGTSDQLFRIFKILGTPNEESWPSITELPEYKTDFPVHP-AHQLSSIVHGLDEKGLNLLSKMLQYDPNQRITAAAALKHPYF 285          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK4_RAT (Cell division protein kinase 4 OS=Rattus norvegicus GN=Cdk4 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.083e-24
Identity = 62/152 (40.79%), Postives = 87/152 (57.24%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKSKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEY 457
            V + G +KLADFGLA   +  ++  LT  VVTLWYR PE+LL +T Y   VD+WSVGC+FAE+   KP+  G +E +QL KIF L G PP+D W +        F P+ P    ++    ++  +   L+  +L+  P KR +A  AL   Y
Sbjct:  148 VTSNGTVKLADFGLARIYS--YQMALTPVVVTLWYRAPEVLLQST-YATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPREVSLPRGAFSPRGP--RPVQSVVPEMEESGAQLLLEMLTFNPLKRISAFRALQHSY 294          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK4_HUMAN (Cell division protein kinase 4 OS=Homo sapiens GN=CDK4 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.083e-24
Identity = 62/152 (40.79%), Postives = 88/152 (57.89%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKSKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEY 457
            V + G +KLADFGLA   +  ++  LT  VVTLWYR PE+LL +T Y   VD+WSVGC+FAE+   KP+  G +E +QL KIF L G PP+D W +        F P+ P    ++    ++  +   L+  +L+  P+KR +A  AL   Y
Sbjct:  148 VTSGGTVKLADFGLARIYS--YQMALTPVVVTLWYRAPEVLLQST-YATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGP--RPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSY 294          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK14_HUMAN (Cell division protein kinase 14 OS=Homo sapiens GN=CDK14 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.083e-24
Identity = 67/164 (40.85%), Postives = 97/164 (59.15%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEV-EQLHKIFKLCGSPPDDYWK-KSKLPHATLFKPQQ--PYDS-SLRETFKDLP--TTAVNLIETLLSVEPYKRATASAALASEYFSTKP 472
            +++ G LKLADFGLA   +       ++ VVTLWYRPP++LLG+T+Y   +D+W VGC+F E++ G     G  ++ +QL +IF + G+P +D W     LPH   FKP++   Y S +LR+ +  L     A +L   LL   P  R +A AAL+ EYFS  P
Sbjct:  264 ISDTGELKLADFGLARAKSVPSHT-YSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPH---FKPERFTLYSSKNLRQAWNKLSYVNHAEDLASKLLQCSPKNRLSAQAALSHEYFSDLP 423          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: MPK1_ARATH (Mitogen-activated protein kinase 1 OS=Arabidopsis thaliana GN=MPK1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.333e-24
Identity = 79/206 (38.35%), Postives = 105/206 (50.97%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKSKLPHATLFKPQQPYD--SSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYACDLSSLPIYPPSK-EIDAKHREDARRKRVVEEFVELRQERLHENP 610
            VN    LK+ DFGLA  SNT   Q +T  VVT WYR PELLL   +YG S+D+WSVGC+FAELL  KPI QG   + QL  I  + GS  ++  +    P A  +    PY    SL   +      A++L++ +L  +P KR + S AL        PY   L      PP++  ID    ED R + + E    +  E LH +P
Sbjct:  166 VNANCDLKICDFGLARASNT-KGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFQGTECLNQLKLIVNILGSQREEDLEFIDNPKAKRYIRSLPYSPGMSLSRLYPGAHVLAIDLLQKMLVFDPSKRISVSEAL------QHPYMAPLYDPNANPPAQVPIDLDVDEDLREEMIRE---MMWNEMLHYHP 361          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: PHO85_CANAL (Negative regulator of the PHO system OS=Candida albicans GN=PHO85 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 62/158 (39.24%), Postives = 89/158 (56.33%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWK-----KSKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYF 460
            +NN+G LKL DFGLA           ++ VVTLWYR P++LLG+  Y  S+D+WS GC+FAE+  GKP+  G    +QL KIF+L G+P +  W       +   +  +F PQ      LR    +L +  +NL+++LL + P  R TA  AL   +F
Sbjct:  139 INNKGELKLGDFGLARAFGIPFNT-FSNEVVTLWYRAPDVLLGSRAYTTSIDIWSAGCIFAEMCTGKPLFPGTANEDQLIKIFRLMGTPNERTWPGISQYTNYKNNWQIFVPQ-----DLRLIVPNLDSMGLNLLQSLLQMRPESRITARQALQHPWF 290          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK17_HUMAN (Cell division protein kinase 17 OS=Homo sapiens GN=CDK17 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 59/159 (37.11%), Postives = 91/159 (57.23%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYW------KKSKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYF 460
            +N +G LKLADFGLA   +   +   ++ VVTLWYRPP++LLG+++Y   +D+W VGC+F E+  G+P+  G T  ++LH IF+L G+P  + W      ++ K  +   +KPQ   + + R     L +  + LI   L  E  KR +A  A+   YF
Sbjct:  321 INEKGELKLADFGLARAKSVPTKT-YSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQETWPGISSNEEFKNYNFPKYKPQPLINHAPR-----LDSEGIELITKFLQYESKKRVSAEEAMKHVYF 473          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK17_RAT (Cell division protein kinase 17 OS=Rattus norvegicus GN=Cdk17 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.097e-24
Identity = 60/159 (37.74%), Postives = 89/159 (55.97%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYW------KKSKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYF 460
            +N  G LKLADFGLA   +   +   ++ VVTLWYRPP++LLG+++Y   +D+W VGC+F E+  G+P+  G T  ++LH IF+L G+P  + W       + K  +   +KPQ   + + R     L +  + LI   L  E  KRA A  A+   YF
Sbjct:  321 INERGELKLADFGLARAKSVPTKT-YSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQETWPGVSSNDEFKNYNFPKYKPQPLINHAPR-----LDSEGIELITKFLQYESKKRAPAEEAMKHVYF 473          
The following BLAST results are available for this feature:
BLAST of CF503956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC28_YEAST3.127e-2438.71Cell division control protein 28 OS=Saccharomyces ... [more]
CDKF2_ORYSJ4.083e-2440.76Putative cyclin-dependent kinase F-2 OS=Oryza sati... [more]
CDK5_DICDI4.083e-2438.96Cell division protein kinase 5 homolog OS=Dictyost... [more]
CDK4_RAT4.083e-2440.79Cell division protein kinase 4 OS=Rattus norvegicu... [more]
CDK4_HUMAN4.083e-2440.79Cell division protein kinase 4 OS=Homo sapiens GN=... [more]
CDK14_HUMAN4.083e-2440.85Cell division protein kinase 14 OS=Homo sapiens GN... [more]
MPK1_ARATH5.333e-2438.35Mitogen-activated protein kinase 1 OS=Arabidopsis ... [more]
PHO85_CANAL6.965e-2439.24Negative regulator of the PHO system OS=Candida al... [more]
CDK17_HUMAN6.965e-2437.11Cell division protein kinase 17 OS=Homo sapiens GN... [more]
CDK17_RAT9.097e-2437.74Cell division protein kinase 17 OS=Rattus norvegic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-444 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503956 ID=CF503956; Name=CF503956; organism=Citrus sinensis; type=EST; length=721bp
GGTGAACAATGAAGGAGTCCTCAAGTTGGCCGACTTTGGATTGGCAAACT
TCTCTAATACTGGACATCGACAACCCTTAACCAGTCGTGTTGTGACTTTA
TGGTATCGTCCACCCGAACTTTTGCTTGGCGCCACAGATTATGGACCGTC
TGTGGATCTTTGGAGTGTTGGCTGTGTGTTTGCAGAACTTCTCATAGGGA
AACCCATCCTTCAAGGGAGAACGGAGGTAGAACAACTACACAAAATTTTC
AAGCTTTGTGGGTCCCCACCTGATGATTACTGGAAAAAATCAAAACTTCC
TCATGCTACTCTGTTCAAACCACAACAACCTTATGACAGTAGTCTTCGAG
AAACATTCAAAGATTTGCCCACAACTGCCGTGAACCTGATAGAAACTTTA
CTTTCAGTAGAGCCATACAAGCGTGCAACTGCCTCTGCAGCCCTAGCATC
TGAGTATTTCTCAACAAAGCCTTATGCTTGCGATCTGTCAAGTTTGCCAA
TATATCCACCAAGCAAAGAGATTGATGCAAAACATCGTGAAGATGCACGC
AGGAAAAGGGTGGTGGAAGAGTTCGTGGAGCTGAGACAAGAAAGACTACA
CGAAAATCCCATGGAATGAGTAAATTGGCACCCGTAGAGGATGTGGCAGT
GCGGACTCAGTTTGCTAAAAAAATTAACGGACATAGTTGCATATTTTGAA
AGATGATGAGTTGTCTGGTAG
back to top