CF503958

Overview
NameCF503958
Unique NameCF503958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503958 vs. ExPASy Swiss-Prot
Match: LACG_CLOAB (6-phospho-beta-galactosidase OS=Clostridium acetobutylicum GN=lacG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.490e-26
Identity = 53/119 (44.54%), Postives = 74/119 (62.18%), Query Frame = 1
Query:  181 FVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEAL 537
            F+FG AT+AYQ EG   +DG+GP IWD + KK G      TGD + D YH+YKED+        +  R SI+WSR+ P G G+VN KG+ +Y+ LI+  +K  + P+  L+H+D P  L
Sbjct:    8 FIFGGATAAYQAEGATKEDGKGPCIWDEYLKKEG----RFTGDTASDFYHKYKEDLKFSRKFGVNGIRISIAWSRVIPDGKGEVNPKGLKFYSDLIDECIKNNVEPFVTLHHFDTPLTL 122          
BLAST of CF503958 vs. ExPASy Swiss-Prot
Match: BGL23_ORYSJ (Putative beta-glucosidase 23 OS=Oryza sativa subsp. japonica GN=BGLU23 PE=5 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 9.365e-26
Identity = 58/116 (50.00%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  217 EGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKR--------GITPYANLYHYDLPEALE 540
            EG   +DGR PSIWD F    G +A+N+TGD +   YH+YKEDV +M++   +AYRFSISWSR+ P G G +N KG+ YYN LI+ L+KR        GI  +  LYH D P+AL+
Sbjct:  110 EGATGEDGRTPSIWDTFTHS-GRMADNSTGDRAAAGYHKYKEDVKLMSDTGLEAYRFSISWSRLIPRGRGPINPKGLEYYNDLIDKLVKRGEICDCSMGIEIHVTLYHLDFPQALQ 224          
BLAST of CF503958 vs. ExPASy Swiss-Prot
Match: MYRA_SINAL (Myrosinase MA1 OS=Sinapis alba PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.223e-25
Identity = 60/139 (43.17%), Postives = 88/139 (63.31%), Query Frame = 1
Query:  142 DTGGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFA----KKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGK--VNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALE 540
            +T  L+  S  + F+FG A+SAYQ+EG     GRG +IWD F      K G   ++  GD + D +  +++D+D++  LN   YRFSI+WSRI P G     VN KG+ YY+ LI+ L+K+GITP+  L+H+DLP+ L+
Sbjct:   16 NTDALNSSSFSSDFIFGVASSAYQIEGTI---GRGLNIWDGFTHRYPNKSG--PDHGNGDTTCDSFSYWQKDIDVLDELNATGYRFSIAWSRIIPRGKRSRGVNEKGIDYYHGLISGLIKKGITPFVTLFHWDLPQTLQ 149          
BLAST of CF503958 vs. ExPASy Swiss-Prot
Match: LCTL_MOUSE (Lactase-like protein OS=Mus musculus GN=Lctl PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.559e-25
Identity = 61/164 (37.20%), Postives = 92/164 (56.10%), Query Frame = 1
Query:   58 LLLGTVTIRCAAGTSYFDEAAQPETVHFDTGGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAK-KPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYG--TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALE 540
            ++LG + +    GT++      PE   F  G     + P GF +G  +SAYQ EG   +DG+GPSIWD F   +   V    T D + D Y++ +ED+ ++  L    YRFS+SW R+ P G    +VN +G+ +Y+  I+ LLK  ITP   L+H+DLP+ L+
Sbjct:    7 IILGWILLVPRVGTAW---RGPPEEASFYYG-----TFPPGFSWGVGSSAYQTEGAWDEDGKGPSIWDAFTHGRKEQVLGGDTADTACDSYYKVQEDIALLKELQVSHYRFSLSWPRLLPTGVRAEQVNKRGIKFYSDFIDALLKSNITPVVTLHHWDLPQMLQ 162          
BLAST of CF503958 vs. ExPASy Swiss-Prot
Match: MYRO_BRANA (Myrosinase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 65/158 (41.14%), Postives = 94/158 (59.49%), Query Frame = 1
Query:   85 CAAGTSYFDEAAQPETVHFDTGGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFA----KKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYG--TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALE 540
            C A      E   P T   +T  LS ++    F+FG A+SAYQ+EG     GRG ++WD F+    +K G    N  GD + + Y R+++DVD+M  LN   YRFS +WSRI P G  +  VN  G+ YY++LI+ LL++ ITP+  L+H+DLP+ L+
Sbjct:   18 CKADEEITCEENNPFTCS-NTDILSSKNFGKDFIFGVASSAYQIEGGR---GRGVNVWDGFSHRYPEKAGSDLKN--GDTTCESYTRWQKDVDVMGELNATGYRFSFAWSRIIPKGKVSRGVNQGGLDYYHKLIDALLEKNITPFVTLFHWDLPQTLQ 169          
BLAST of CF503958 vs. ExPASy Swiss-Prot
Match: MYR3_SINAL (Myrosinase MB3 OS=Sinapis alba PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = 1
Query:   85 CAAGTSYFDEAAQPETVHFDTGGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFA----KKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYG--TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALE 540
            C A      E  +P T   +T  LS ++    F+FG A+SAYQ+EG     GRG ++WD F+    +K G    N  GD S + Y R+K+DV+IM  LN   YRFS +WSRI P G  +  V+  G+ YY+ LI+ LL++ ITP+  L+H+DLP+ L+
Sbjct:   18 CKADEEITCEENEPFTCS-NTDILSSKNFGKDFIFGVASSAYQIEGGR---GRGVNVWDGFSHRYPEKSGSDLKN--GDTSCESYTRWKKDVEIMGELNATGYRFSFAWSRIVPKGKVSRGVDQAGLDYYHNLIDALLEKNITPFVTLFHWDLPQTLQ 169          
BLAST of CF503958 vs. ExPASy Swiss-Prot
Match: BGL36_ARATH (Putative myrosinase 6 OS=Arabidopsis thaliana GN=TGG6 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 55/120 (45.83%), Postives = 77/120 (64.17%), Query Frame = 1
Query:  181 FVFGTATSAYQVEGMAHKDGRGPSIWDVFAKK-PGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYG--TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE 531
            F FG ATSAYQVEG AH+   G   WD F  + P  V++ + GD++ + Y  YK+DV ++  +N  AYRFSI+WSR+ P G   G V+  G+ YYN LIN L   GI P+  ++H+D+P+
Sbjct:   29 FTFGAATSAYQVEGAAHRALNG---WDYFTHRYPERVSDRSIGDLACNSYDLYKDDVKLLKRMNVQAYRFSIAWSRVLPKGRLIGGVDENGITYYNNLINELKANGIEPFVTIFHWDVPQ 145          
BLAST of CF503958 vs. ExPASy Swiss-Prot
Match: GMUD_BACSU (6-phospho-beta-glucosidase gmuD OS=Bacillus subtilis GN=gmuD PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.307e-24
Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 1
Query:  172 PNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQ-YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALE 540
            P  F +G++ SA Q+EG A +DG+G +IWD + +K      +  G     Q Y  YKED+ +M  L  +++R SISWSR+ P GTG++N K   +YN +I+ L+  GI P+ NL+H+D+P AL+
Sbjct:   10 PKDFWWGSSASATQMEGAADRDGKGQNIWDYWFEKEPHRFFDHVGPADTSQFYDNYKEDIRLMKELGHNSFRMSISWSRLIPNGTGEINDKAADFYNNVIDELIANGIEPFVNLFHFDMPMALQ 133          
BLAST of CF503958 vs. ExPASy Swiss-Prot
Match: LACG_STRU0 (6-phospho-beta-galactosidase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=lacG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.013e-24
Identity = 54/125 (43.20%), Postives = 75/125 (60.00%), Query Frame = 1
Query:  163 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEAL 537
            ++LP  F+FG AT+AYQ EG    DG+GP  WD + +         T + + D Y+RY  D+ +    N +  R SI+WSR+FP G G+VN KGV YY+ L     KRG+ P+  L+H+D PEAL
Sbjct:    3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEDNYWY----TAEPASDFYNRYPVDLKLAEEYNVNGIRISIAWSRVFPTGYGEVNRKGVEYYHNLFAECHKRGVEPFVTLHHFDTPEAL 123          
BLAST of CF503958 vs. ExPASy Swiss-Prot
Match: LACG_LACLA (6-phospho-beta-galactosidase OS=Lactococcus lactis subsp. lactis GN=lacG PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.013e-24
Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = 1
Query:  163 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEAL 537
            ++LP  F+FG AT+AYQ EG  H DG+GP  WD + +         T + + D YH+Y  D+++      +  R SI+WSRIFP G G+VN KGV +Y++L     KR + P+  L+H+D PEAL
Sbjct:    3 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYWY----TAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEAL 123          
The following BLAST results are available for this feature:
BLAST of CF503958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
LACG_CLOAB5.490e-2644.546-phospho-beta-galactosidase OS=Clostridium acetob... [more]
BGL23_ORYSJ9.365e-2650.00Putative beta-glucosidase 23 OS=Oryza sativa subsp... [more]
MYRA_SINAL1.223e-2543.17Myrosinase MA1 OS=Sinapis alba PE=1 SV=2[more]
LCTL_MOUSE3.559e-2537.20Lactase-like protein OS=Mus musculus GN=Lctl PE=2 ... [more]
MYRO_BRANA1.352e-2441.14Myrosinase OS=Brassica napus PE=2 SV=1[more]
MYR3_SINAL1.352e-2441.77Myrosinase MB3 OS=Sinapis alba PE=1 SV=1[more]
BGL36_ARATH1.352e-2445.83Putative myrosinase 6 OS=Arabidopsis thaliana GN=T... [more]
GMUD_BACSU2.307e-2441.946-phospho-beta-glucosidase gmuD OS=Bacillus subtil... [more]
LACG_STRU03.013e-2443.206-phospho-beta-galactosidase OS=Streptococcus uber... [more]
LACG_LACLA3.013e-2442.406-phospho-beta-galactosidase OS=Lactococcus lactis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-446 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503958 ID=CF503958; Name=CF503958; organism=Citrus sinensis; type=EST; length=541bp
TTTCTTTCTTTGAAGATGAGAGTCCCGCTTGCAGTTGCAGCCTCCTTCTA
CTTCTCCCTCTTGCTCGGCACTGTTACAATCCGGTGTGCTGCTGGTACAT
CTTACTTCGATGAAGCCGCACAGCCTGAAACTGTCCATTTCGACACCGGC
GGGCTGAGCAGAGAAAGCCTCCCGAACGGCTTTGTGTTTGGAACGGCCAC
GTCCGCTTATCAAGTGGAAGGCATGGCCCACAAAGACGGTCGTGGGCCCA
GCATTTGGGATGTCTTTGCTAAGAAGCCCGGAATTGTTGCCAATAATGCC
ACCGGGGATGTGTCCGTGGACCAATATCACCGTTACAAAGAGGATGTTGA
TATCATGGCAAATTTGAATTTTGATGCATACCGGTTCTCAATTTCCTGGT
CCAGAATTTTCCCATATGGAACTGGGAAAGTAAATTGGAAGGGAGTTGCA
TACTACAATCAGCTGATCAACTACTTGCTCAAAAGAGGTATTACTCCATA
TGCAAATCTTTATCACTATGATCTTCCTGAAGCTCTCGAGA
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