CF503958

Overview
NameCF503958
Unique NameCF503958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503958 vs. ExPASy Swiss-Prot
Match: BGL39_ARATH (Putative myrosinase 3 OS=Arabidopsis thaliana GN=TGG3 PE=5 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.567e-17
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  238 GRGPSIWDVFA----KKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALE 540
            GRG ++WD F     +K G    N  GD +   Y  +++D+D+M  L  D YRFS++WSRI P  +   N  GV YYN LI+ LL + ITP+  L+H+DLP+ L+
Sbjct:   54 GRGLNVWDGFTHRYPEKGGPDLGN--GDSTCGSYEHWQKDIDVMTELGVDGYRFSLAWSRIAPRES---NQAGVKYYNDLIDGLLAKNITPFVTLFHWDLPQVLQ 153          
BLAST of CF503958 vs. ExPASy Swiss-Prot
Match: ASCB_ECOLI (6-phospho-beta-glucosidase ascB OS=Escherichia coli (strain K12) GN=ascB PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.074e-13
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 1
Query:  172 PNGFVFGTATSAYQVEGMAHKDGRGPSIWDVF-------AKKPGIVANNATGD-------VSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTG-KVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 528
            P  F++G A +A Q EG   +  +G +  D+        A K G+       D        + D YHRYKED+ +MA + F  +R SI+WSR+FP G     N +G+A+Y  +     K GI P   L H+D+P
Sbjct:    5 PESFLWGGALAANQSEGAFREGDKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEATDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDEITPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVP 138          
The following BLAST results are available for this feature:
BLAST of CF503958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
BGL39_ARATH3.567e-1742.86Putative myrosinase 3 OS=Arabidopsis thaliana GN=T... [more]
ASCB_ECOLI1.074e-1334.336-phospho-beta-glucosidase ascB OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-446 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503958 ID=CF503958; Name=CF503958; organism=Citrus sinensis; type=EST; length=541bp
TTTCTTTCTTTGAAGATGAGAGTCCCGCTTGCAGTTGCAGCCTCCTTCTA
CTTCTCCCTCTTGCTCGGCACTGTTACAATCCGGTGTGCTGCTGGTACAT
CTTACTTCGATGAAGCCGCACAGCCTGAAACTGTCCATTTCGACACCGGC
GGGCTGAGCAGAGAAAGCCTCCCGAACGGCTTTGTGTTTGGAACGGCCAC
GTCCGCTTATCAAGTGGAAGGCATGGCCCACAAAGACGGTCGTGGGCCCA
GCATTTGGGATGTCTTTGCTAAGAAGCCCGGAATTGTTGCCAATAATGCC
ACCGGGGATGTGTCCGTGGACCAATATCACCGTTACAAAGAGGATGTTGA
TATCATGGCAAATTTGAATTTTGATGCATACCGGTTCTCAATTTCCTGGT
CCAGAATTTTCCCATATGGAACTGGGAAAGTAAATTGGAAGGGAGTTGCA
TACTACAATCAGCTGATCAACTACTTGCTCAAAAGAGGTATTACTCCATA
TGCAAATCTTTATCACTATGATCTTCCTGAAGCTCTCGAGA
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