CF503965

Overview
NameCF503965
Unique NameCF503965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503965_ssr7 microsatellite CF503965_ssr7:7..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQI 632
            +PQS+DWR  GAVT VKNQNPCG CWAF+A+A VE I +I
Sbjct:    2 VPQSIDWRDYGAVTSVKNQNPCGACWAFAAIATVESIYKI 41          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.139e-11
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  205 LFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEF 387
            +FESWM+KHGK Y+S  EK  RL IF+DNL+ I  RN E     SY LGLN F+D+S  E+
Sbjct:   55 MFESWMVKHGKVYDSVAEKERRLTIFEDNLRFITNRNAE---NLSYRLGLNRFADLSLHEY 112          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 3
Query:  513 LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVT 638
            LP  VDWR KGAV  +KNQ  CG CWAFSAVAAVE IN+I T
Sbjct:    1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRT 42          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 3
Query:  507 EDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVT 638
            + LP+S+DWR+KG +  VK+Q  CG CWAFSAVAA+E IN IVT
Sbjct:   16 DSLPESIDWREKGVLVGVKDQGSCGSCWAFSAVAAMESINAIVT 59          
BLAST of CF503965 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 9.291e-11
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 3
Query:  507 EDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVT 638
            E LP  VDWR KGAVT V+NQ  CG C+AF+  AA+E  ++ +T
Sbjct:  180 ERLPDQVDWRTKGAVTPVRNQGECGSCYAFATAAALEAYHKQMT 223          

HSP 2 Score: 31.187 bits (69), Expect = 9.291e-11
Identity = 25/92 (27.17%), Postives = 43/92 (46.74%), Query Frame = 1
Query:  133 GHDGEFSIVGYSLEVLTST------DKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNREL-QITSSYWLGLNEFSDMSHEEF 387
            G  GE ++V   L+           +KL   ++ ++   GK Y+  E    R+ IF+ N    +  N++  Q   SY   LN+ +D++ EEF
Sbjct:   60 GQQGESTVVQEFLKKTEDNGEQRAMEKLETEWKDYVTALGKHYDQKENNF-RMAIFESNELMTERINKKYEQGLVSYTTALNDLADLTDEEF 150          
The following BLAST results are available for this feature:
BLAST of CF503965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
BROM2_ANACO7.068e-1170.00Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
CPR4_ARATH7.139e-1155.74Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
ERVB_TABDI9.231e-1171.43Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]
CYSPL_SOLLC9.231e-1163.64Low-temperature-induced cysteine proteinase (Fragm... [more]
CATL_BRUPA9.291e-1154.55Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-453 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503965 ID=CF503965; Name=CF503965; organism=Citrus sinensis; type=EST; length=639bp
GTGGGGGAGAGAGAGAGAGAGAGAGAGATGAAAATGTTATCTTCCAATTG
TAAGTTGTTGCTTCGTCTTTCTTTGTGCGTGTCTCTCTTGATGATCATAT
GCATACGCTGCTCTAGCAGTAGAACTCTTCAAGGTCATGATGGTGAGTTC
TCCATTGTGGGGTATTCACTAGAGGTGTTGACATCCACGGACAAGCTGGT
TGAGCTATTCGAGTCATGGATGTTGAAACATGGGAAATCGTATGAAAGCA
CGGAAGAGAAGTTGCATAGATTGGAGATATTCAAAGACAACTTGAAGCAC
ATTGATGCGAGGAACAGAGAGCTGCAAATTACTAGTAGCTATTGGCTTGG
TCTGAATGAGTTTTCAGATATGAGCCACGAAGAGTTCAAGAACAAGTACT
TAACAGGACTCAAACCCGATGATGATGAGTTCCGCAGAAGGAGTCACCGC
GACTCCAGTAGTAGATCTTCTGCTAGCAGTAGTAATCATTTTTTGTACAA
AATGTAGAGGATTTGCCTCAATCCGTTGACTGGAGGAAGAAAGGAGCTGT
CACTCATGTCAAAAACCAAAATCCTTGTGGTGGATGTTGGGCATTTTCAG
CAGTAGCAGCAGTGGAGGGGATAAATCAGATAGTGACGG
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